Array 1 73640-73185 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKME01000008.1 Actinotignum timonense strain UMB0086 .16933_8_38.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73639 28 100.0 33 ............................ CGAGTTTCGGCTTGCCGTCAAGCTCGAATTCAG 73578 28 100.0 33 ............................ TGGATTCAGGAAAAAGTGGTACCGGCGCTTAAG 73517 28 100.0 33 ............................ CATGGGTAAATGATTGGAGTGAGGGCGCCGAAA 73456 28 100.0 33 ............................ TGATGATCCTACACGCAGCGCAACCCCTCACGC 73395 28 100.0 33 ............................ CGGCCTGGCATAATCCCGAGGGGTAGTGAGATC 73334 28 100.0 33 ............................ CAAGGAGTTGCGCCTCGATCTGGAAACAGCAAT 73273 28 100.0 33 ............................ CGCCATCGAAACGGTTAAGGGATTCTTTAGCGA 73212 28 75.0 0 ...........ACGA.C.....C..C.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 33 CTCTTCCCCGCGTACGTGGGGGTAATTC # Left flank : ACCGATATTGCCGACGGCAAGGAGCACGCTACTGACGCTTAGGAACCTGCTTTCCGCAGGAACCAGATCTCCAAAGGAACCCGGTCACCAGCACATCTCACCGCTGCTTGGCCACATAGCGCCGGGCAAGATTGCCTGTTCGGTGAGGGCGTGCAGTTTCGGTTACGCTAGCCGTGCAGTTTTAACTTGCGCTTGACAGACAGCATGTTAAGGGCAAAGAACCAGGCGAAGAAGATACACATGCCCCGTCATACTGGGGCACCGCCGGTCTGGTAAGCGCTCTGTCACCATAGTCAAACCTGGTAATCAGAAGCGCCCCCCTTGTGTCCGATAACGACAGGCAGGACGTAATAAGCTAAATTTGAGGTGTGGGAACTGACATGCTCGTGACACGCGGAGCACTGGCGTACCGGGAATTTCTCGCAGCGAACCGTAAATTTGGAACTCTATTCCAGTCAGATTTCCGGATCTGCCGCGAGTAAACAACCAGGTCAGGCAGG # Right flank : CGCTGCTACCCCACACCACTCACCTAAAGTAAACGACGTGCAATTTCGTTTGCGGCAGATTGGTAACTTCACCAACCCCGAGATCTACAGCTTCAAGCCGTGCCACTCATTGCGCGGAAACGCTACCGCACCAGCCCTTCGCGGCGCCGTGCAGCAGACATCGCCCGCTGCGCCTCCCGGTCCGCCTCGCGCCGGCGGATTGTTTCGCGCTTATCCCATTCCTGCTTGCCCTTGGCCACCGCGATTTCCAGCTTGGCCAGCCCGCGCACGAAATACAGCTCGAGGGGCACAATCGTATAGCCCTTCGCCTCGACCGCCCGCGCCAGCTTCTCGATCTCCGATTTGTGCAGCAGCAGGCGGCGCTTGCGGGTAGGCGCGTGATTCGTCCACGTCCCCATCGCGTAAATCGGGATATTAATCCCGTGCGCGTACACCTGCCCGCGATCCACCTCAATCCAGCCGTCCACCAGCGAAGCACGCCCCATGCGCAGCGCCTTCAC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGTACGTGGGGGTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 317035-315478 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKME01000001.1 Actinotignum timonense strain UMB0086 .16933_8_38.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317034 29 100.0 32 ............................. GACTAACGAAAGGTATACATAATGTTTCACAC 316973 29 96.6 32 ............................T GCCTACGGGCCGCTACTTTGCGCGCACGGCAA 316912 29 100.0 32 ............................. CTGAATCCAGGTCCCCTGCGTCTTCGCGTACT 316851 29 100.0 32 ............................. GCATCGGCGGGTCGCCGCGTGAAAGTGAATCG 316790 29 100.0 32 ............................. TGGTGCGCGCGCTCTTGTTAGGCAGTAGGGAA 316729 29 96.6 33 ............................A TAGCAACTCTCAGCTTTGGAATAATTGACTGCA 316667 29 100.0 32 ............................. GTGCAGCCGCTCCACGTGGCGGGCACGCTCAC 316606 29 100.0 32 ............................. CTGCATGCAACGCACGCGCATTAATTACGCGG 316545 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 316484 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 316423 29 100.0 32 ............................. CCTGAGAAAGGAGAAATAATGTCTACACGTAA 316362 29 100.0 32 ............................. AACCGGACGCGGCTCGTCGCTGACCGCGAGGC 316301 29 100.0 32 ............................. AAATACGAGGATCAATGTAACGAGGCTTGCTG 316240 29 96.6 33 ............................T AACGTAGCGCAGTGACGGGGCCAGTAAGTCACG 316178 29 100.0 32 ............................. GCATGCGACTGCGTATCGGGTTTTCGTGGACC 316117 29 96.6 32 ...............G............. GCGTGAAAGAATCCGCGGCCGGCCTGGTGGAA 316056 29 100.0 32 ............................. CCCTATCCCGAATTACATCCTATGCGACCGGT 315995 29 100.0 32 ............................. CCCTATCCCGAATTACATCCTATGCGACCGGT 315934 29 100.0 32 ............................. TCGGAAGGCTTCGTGACCATCAACGGCAACCG 315873 29 100.0 33 ............................. GCTCAGTAAGTCGTGTGTTTCGCTCCAGCATCG 315811 29 100.0 32 ............................. GCATCGGCGGGTGGCCGCGTGAAAGTGAATCG 315750 29 100.0 32 ............................. CCCCAGCGCCGCCGGTGGGTGAGGCTGGGAGT 315689 29 100.0 32 ............................. ATACGCAAACCGCCCGGCGCATTCGCGATCTC 315628 29 100.0 32 ............................. CCGGAATGTCTTGCGAATAGAATATTCCGGCC 315567 29 100.0 32 ............................. GCCAAGCAAGCTCCCCTGCGTTCACTGCGATG 315506 29 89.7 0 ........................A..GT | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 CTGTTCCCCGCGCGCATGGGGGTATTTCC # Left flank : ACGGATAGGAGAGCGGGATGTTCGTTGTTGTTAATGCGGTCGCTATCCCGGATCACCTGCGTGGATACTTGAGCAGATTTCTTTCCGAGGTGACCACCGGATTGTACGTGGGAGTTGTTTCCGCGCGAGTGCGGGACAATTTGTGGGAACGCGCCGTATCCGCCGCGGGTACCGGCAGCCTCACTCTTATTTATAACGACGCCGCCCGTGAGCAAGGCTTCGCTCTGCGCAGCACGGGAACCGGCAGTCGCCCAGTCCTTGATCTGGACGGCATGCTGCTTATCGGGACGGGTGCGGAGGATGCGTCTGGGTAGGATGGAGGTGACATGCCAGTATCTTGTGAAGACATGAAGGAGGGATTGAGATAAATTTGAGAGGTGGGAGCTGACATGGTTGCAATATCCGGTGCATTCTCATATCCCGGACAGAGCCACGAATCTGGAACTCTGTTCCACTGTTATTTCCGGGTCCGCCGCCGATAAACGACCAGGTCAGGCAGT # Right flank : CAAGCGCAAGTTAAAACTGCACGCCTAGCGCAATACGAATTGCACGCCTAGCGCAAGGAAATGCACCCCCAGCGCAACTAAAACTGCACGTCCTCACCGAACAGGAAATCTCGTCCGGCGCCCGAATGCCCCTACCGGTACCATCACTCAACGCCGCCTTCGGCGGGCGTCGGTACCAGCCGGCACCCCCCAAGTCCTCCCAAACCACCCCGAAACCCTGTTTCTGATACCCGCAGGGCGGGCGTAGCCCTCCACTCAACGTTCGCCGGCAATTGTTCTCCGCGCGAGTGGAGGTAATTCCATTGAGCGGCAGTCCCTAGAGTTCGTGAAATACTCATCCCCGCGCAGGTGGGGTGGTAATTTCTATCGACGAAGACTGTCTATGAGGTGAGACAAAGCCAATGGTGGAACCACGGGCACCGGCGGGATAATACGGGAGCGTGGCATTGGTGACATGCTGCACCTAGCGGCGTCCGATTTCTCGGCAGCTACCGTTGGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGCATGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 591511-590027 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKME01000001.1 Actinotignum timonense strain UMB0086 .16933_8_38.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 591510 29 100.0 32 ............................. CGTATTCATGCCGCGCGGCGAATGGCGCAGCT 591449 29 100.0 32 ............................. ATGCCTAGCACGCCATCGATGCTGTAATCGGA 591388 29 100.0 32 ............................. AAAGACCATTGAGACACAGACTGCCGGCTCGC 591327 29 96.6 32 ............................T ATTGGTGCTGAGATCGGGCGGGTGTTTATTGA 591266 29 96.6 32 ............................T AATCTCCATTATTGCCCCTCTCCTCCTTGTAG 591205 29 100.0 32 ............................. GCATATACGGGTGTGGTCATGCGAGGGCGGGG 591144 29 100.0 32 ............................. TACATGGCTACCATCATGGATAACATCACCAT 591083 29 100.0 32 ............................. GGGGCCGAGCGGGTCACGCGCGAGCCGGATAG 591022 29 100.0 32 ............................. AAAGACCATTGAAACGCAGACCGCCGGCTCGC 590961 29 100.0 32 ............................. GCTTTGATGGATTCACGGGTGCGCGGGAACGC 590900 29 100.0 32 ............................. CGAGATAGTGCCGTAATTACCCTCGAGATCAG 590839 29 100.0 32 ............................. ATCTGCCGAGCTTGCCTTGCGAGCAAACAGGC 590778 29 100.0 32 ............................. AGATTTTAGCGATGAAATTACGGGTATTGCGT 590717 29 100.0 32 ............................. GGCGGGATGAACAACCCGCCACCGGCCCCCAC 590656 29 96.6 32 ............................T ATCGCCGAGGCCGAGCTCGGCGGGGAGCTGCA 590595 29 100.0 32 ............................. GTCGCCGCCGCGCATGATATTCGGGATCATAA 590534 29 100.0 32 ............................. GCCCGGCGAAACATTCGGCTCTCTCAAAGCTG 590473 29 100.0 32 ............................. CTTCGGGATTTTGTTCCCGCGGGTGAGGAAGC 590412 29 96.6 32 ............................T AGATAAGTCATCCAGAGTTGACATCTCTACCG G [590395] 590350 29 96.6 32 A............................ TCGTAGCCGGTGAGGTTTTTACGATCCCTGAT 590289 29 93.1 32 A.......................T.... CAAGGCGCATATACCCGGCGCGTAGGTGTGGC 590228 29 89.7 32 .............G..C.......T.... TTCCAGGACACCGGCGATATCGACGATATGGT 590167 29 82.8 83 ...........A..A.C..A....A.... CTATAACCGAGATACCGGGAATCGAACCTCTATTGTGTGTTGATCTACCATAGTCGTCTCCATGGGCTAAGCTCGTAACGAGC 590055 29 69.0 0 GGT....A...CA...C.T......G... | ========== ====== ====== ====== ============================= =================================================================================== ================== 24 29 96.6 34 CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Left flank : AAATCTGCTGAACTAGGTGTGCTTTCCGCCTAGATCTCAGCATCGTTGAGAAAGCCACTGGTGAGTACGTTTGCTACGGGCGTGCTCGCGACACCAACATAGATAGGTTCGTCAGGGCCTGGTTCGTGTGGAACCCTGGAGCCGAAAACAACTACCAACGAACTGCGCCCGGAGAATACTCCTTTGGCTATCGTCGGACCCGGGTTCGATTCCCGGCATCTCCACTTATGATGAGCACCCACTCCGATTCTTCGGCGCGGGTGCTCACGTTATGTAAGCGCCTTGTCGCCACGGCCCAACTTGATAATCAGAAGCGACTCCTCGTGTCCGATAAGGACGAACAGGGCAGAATAAGCTAAATTTGAGGCGTGGGAACTGACATGAAAGCCATGCTTGGCGGGCTGGCAATGTGGAGGCGTCTCGCGGAGAACCACAAAGCTGGAACTCTGTTCCAGCTTGTTTTTCGGGCCCGCCGCGAATAAACGACCAGGTCAGGCAGT # Right flank : CCTGCTTAGGACCGCCTTCCCCGCGTGAGCGGGAGTAGCAGCACGTTTCCGATTGCGTATTCTCCCACATGTTTAGCTTCAGGCTCGCGGGGAGAAACACACTTATAAACACAGGTGAAATATGTTGATACTCGTATCTTCTTCCGTCAATCTCGTTTCATTTCAATGAGGGAGAAGCATGGACAATATCAATGCTTTGACGGATATTCCGTTACTTGTTACTACGCGCGGGCGATTATCAGTTCGCGATGCACTTCTCAATGCTCATATTCGAAAAGATCCCCCTAACGAAAAAAAGGACTACGAACCGCTGGTTGAACCGGCAGTCGAACCAACAGGTGAACCAGTAGTCCTAGATAAGACTGTTCCGGGCTACGTGTACGGTGCGCAGCTGAGGTTGATGGCGGCGGTTACCGCCGTGGCTGTGAGGCTTTCCAAGCGCACTCACCGGGATCCGTTCCGGATCGAAGAGCAATCCATTCTTTCGGAAGGGCTTGAAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //