Array 1 115416-113408 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912437.1 Shewanella sp. 38A_GOM-205m N512DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115415 28 100.0 32 ............................ GGGCAGCTTGAGACATCAAATCTTGTGGCTAC 115355 28 100.0 32 ............................ ATCATTGAATCGAACCCATCCGCTAACTGCCT 115295 28 100.0 32 ............................ GATAAGTGACGATATCGGCACTTACACATACA 115235 28 100.0 32 ............................ GCCACCAGTTCAAGCCCAGGATGTTGCAGTAA 115175 28 100.0 32 ............................ GTGCCCTGGAAACAGGGCGCATTGGGAAGGTT 115115 28 100.0 32 ............................ AGCAGCTGGTGAACGCATTTCTAAAAGGGTTA 115055 28 100.0 32 ............................ TCACCCAGCCAGGGCTTGTCTGCACTCTGATT 114995 28 100.0 32 ............................ TCACTCCAGCGGCAACCAGTCGCCAGACATAT 114935 28 100.0 32 ............................ TGTGAGGCAGTTGCGTTATCAGAGACATAAAC 114875 28 100.0 32 ............................ CTTATGAAAGCCTTCCTTCTTCTTGGTCTACC 114815 28 100.0 32 ............................ TAGATGTGACGAACATATCGCAAGTCGTTGAT 114755 28 100.0 32 ............................ TAAAAGTAGGAGTTTAAAACATGCGTAAATTT 114695 28 100.0 32 ............................ CGCCGGAGAATATCGCCCAGTAAAACACCTCG 114635 28 100.0 32 ............................ ATTAAATGACGCTTGAAGATTAACCGCTTGCT 114575 28 96.4 32 ...........A................ TCCCGAGATAATCATTGAAAAGTTGCGTGATG 114515 28 100.0 32 ............................ TTACTGGACTTTTCAGGGCTGACCGTTCCTCT 114455 28 100.0 32 ............................ AGATGCTGAATGACTTCCTTTGCCACCTCAGT 114395 28 100.0 32 ............................ TATGCTTAAAGCACACAGACACTCCTAACTAA 114335 28 100.0 32 ............................ TTTGGCCTTGCTGAGTCCGAAGAATGCAAATT 114275 28 100.0 32 ............................ TATCTGTCGTTCATCTATAACGTCGGCGCTGA 114215 28 100.0 32 ............................ TTCAGGTGACGCAGTACCCAAGCCAAAGGCGC 114155 28 100.0 32 ............................ ACTTATCGGCATTGAAGCCAGTGACAATAAAG 114095 28 100.0 32 ............................ GGCAGATGCCATTACAAGACCACCACCTACAG 114035 28 100.0 32 ............................ TATAAAAGCCTTTCTATTGCAATAATGGTTGT 113975 28 100.0 32 ............................ TTTGTGAGAATGGTTAAGGGGTTCATTGATCA 113915 28 100.0 32 ............................ ACTCTCAGAAAAAAGCTGGAAGACGAGGCGAT 113855 28 100.0 32 ............................ TAGATACGTCCACTCCACCTGCGCCCAGATTT 113795 28 96.4 32 ............T............... CAGAACGTGGCTGTTATTGAAGCCGCCAACCC 113735 28 96.4 32 ............T............... GTTGTCGGCTTCCATCAGTGGAGGCTCTTTGC 113675 28 100.0 32 ............................ AGATCCCCGCAGTGTTCGAGGCGGCAAACCTG 113615 28 100.0 32 ............................ AGGCCGAGATAGTAGAAGAAATGCTGGACACA 113555 28 100.0 32 ............................ GTAGGAAGCAGCTGCCACTACTTTTGCTGTTC 113495 28 100.0 32 ............................ AGCTTATTGACGTTGATATGTTGGCCGATATT 113435 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : GCAGCTTAGAAATGACGAATGTTTGACGCGGACAGTTCTCAGCGGTTCACTGCCGCCCAGGCAGCTTAGAAATTCGTCAGCGCAAAGCTCTAAAGCGTCCCGTTGTTCACTGCCGCCCAGGCAGCTTAGAAAACCAAATGCCACGCCATTTAACCGCTGCTTAAGTTCACTGCCGCCCAGGCAGCTTAGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAGCAAAC # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGAAGTGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 117794-115724 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912437.1 Shewanella sp. 38A_GOM-205m N512DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117793 28 100.0 32 ............................ GCATTCCCGAATTCCCCCCTCTGCTCGGCTCA 117733 28 100.0 32 ............................ TTTCATCGTCTTGTTCATGCGATAAATCATCC 117673 28 100.0 32 ............................ TTGTGGGCGTATCGTTAAAAGTGAGCAGTTTT 117613 28 100.0 32 ............................ TCTCAACCATGTGGAGAATCGCCTTGCTCTTG 117553 28 100.0 32 ............................ TATTGAAACACTCGAGCAGTTTCAGCAGTTCG 117493 28 100.0 32 ............................ AGAGCAGCACGGCAGTCCGAAATCCAGCGAAC 117433 28 100.0 33 ............................ CTGGTAAAGCCTTATTGATATCAAAATGTTCTA 117372 28 100.0 32 ............................ TCGATGCAGATGGCTTCGGTCTGGTCTTTGAC 117312 28 100.0 32 ............................ CTTATGTTAAGGAAACACCTATAGGCACAATT 117252 28 100.0 32 ............................ TAGAAAAGAAGCCAATCCAAGAATCAGAGCTA 117192 28 100.0 32 ............................ TTGGTGTACATCTCAAATCCGCTTGCATTTGG 117132 28 100.0 32 ............................ TTGCTGCAAACGACTGGCCAACGTCAACGGTC 117072 28 100.0 32 ............................ AATATAAATGAATCTATTAAGAGTCTTAAGTC 117012 28 100.0 32 ............................ TATCAATCGCGCCGAGACCGATAAAGCGTGTT 116952 28 100.0 32 ............................ TTGGCGAAACCTTCCTCCTTTTCCGTTAACTT 116892 28 100.0 32 ............................ AAAAGTACTTGCAAAAGAAAATAGGTTTGCTA 116832 28 100.0 32 ............................ TGATGCACGAGAAGGGTCGCGACGATGCCAAA 116772 28 100.0 32 ............................ AGCTCAATCAGCTGGATAAGTTCCTTGAGTCT 116712 28 100.0 32 ............................ TTTTCAGCGTATCGACAAGGAAACGCTTTGAT 116652 28 100.0 32 ............................ ATTCACGATCTCAGTACAACAATCACTAAACA 116592 28 100.0 32 ............................ AAAAGTTAAAGACAAACCATCCCCCACGCCTC 116532 28 100.0 32 ............................ AAAGCAATCGAATCAGCAGTAGCAAACATTCA 116472 28 100.0 32 ............................ GCTATCAGAGAGCGCCCAATATTTTACTTGCT 116412 28 100.0 32 ............................ TATCATTGTCGATGATGGAGATGGAAATCTCT 116352 28 100.0 32 ............................ AATGTTCCTCATAAGAGCTTATTCATAGTGAT 116292 28 100.0 32 ............................ AGGACCGGAGAGCTTGAGTCTATAGTTCTTTG 116232 28 100.0 32 ............................ TCGATGCAAATGGCTTCGGTCTGGTCTTTGAC 116172 28 100.0 32 ............................ TGTTGCCAGGGAGCATCAGAATTAACTATCAA 116112 28 100.0 32 ............................ AATATATTCCCGAGGCCTTTATTGACAAAAAG 116052 28 100.0 32 ............................ ATTTGATAGCATCAGCTCTTTGATCCTGTCCC 115992 28 100.0 33 ............................ CGTTATTGATGAACAACTAGGCGTTGAAAGCAT 115931 28 100.0 32 ............................ TGACGAATGTTTGACGCGGACAGTTCTCAGCG 115871 28 100.0 32 ............................ TTCGTCAGCGCAAAGCTCTAAAGCGTCCCGTT 115811 28 100.0 32 ............................ ACCAAATGCCACGCCATTTAACCGCTGCTTAA 115751 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCCGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGGGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGAGCAAACGTTCACTGCCGCCCAGGCAGCTTAGAAAGGGCAGCTTGAGACATCAAATCTTGTGGCTACGTTCACTGCCGCCCAGGCAGCTTAGAAAATCATTGAATCGAACCCATCCGCTAACTGCCTGTTCACTGCCGCCCAGGCAGCTTAGAAAGATAAGTGACGATATCGGCACTTACACATACAGTTCACTGCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //