Array 1 83444-84248 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZQ01000002.1 Alcaligenes faecalis strain GZAF4 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83444 28 100.0 33 ............................ TGCCCCACCTTCAAACGAAGCGTGGGGCTTTTT 83505 28 100.0 32 ............................ ACAAGAATACGGCTTATTTGGCCGGATTAATG 83565 28 100.0 33 ............................ AAGAAGGGAGGATTACCTCAGCATGCGTTTTTT 83626 28 100.0 32 ............................ TTAGAGAAGGCGAAAGTCCTGGCTGCTGTTCG 83686 28 100.0 32 ............................ ACAACTTGTTTGACGGACAGTTCCAGGCGGGA 83746 28 100.0 32 ............................ CGTACTCGAATAAACGTTACTTGCGCCTGAAC 83806 28 100.0 32 ............................ TGAGCCCACATACTCTGCGTTTACTGCACCAC 83866 28 100.0 32 ............................ AGTATGCAGCTCCAAAAGGGACAGCTGGTATA 83926 28 100.0 33 ............................ AGTCTGAGCATTGGGAGCCTGGGCAGGTTGTGA 83987 28 100.0 32 ............................ TGTCTGACCGAGTGAACCGTGAGCGGGTAAAT 84047 28 100.0 33 ............................ ATCTTGCCCACATATTCAAGCAGAACCTCCCGT 84108 28 100.0 32 ............................ ATGCTCGGACGTTGTGGGCGGTTGTCCACCCG 84168 28 82.1 26 ...........AA....TG.T....... CGCCGATCGTTCGAGGGGGGGTAAAT 84222 27 78.6 0 ....-......CT..A......CG.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCAGGATTACGCAGGGCGGCTTGTACATCGCTATGTCTATGAACCAGCCAAGCCCCTCCGCAGAAATCCGCATCCCACACCAAAGGCGGCCCCTGCCGAAGGCGGGCATAAGCTGCATAGGGAGACGCAAGATTGAATTCGCCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCATTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCTGGGTGTTTTGAGGGAATTAAAAGTTTGTTTGCGGTTTATGGGGGAGGTTGCTTGAACTGGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTTGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAAATCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AAGCTTGTGGGTCTCTATCATGCATATGCAAAGTGTGCTGCTCTATGCGCCGCTGAAAAGGTGTTTAATTTCAGTTGTTTAGCCAGTTTTGTAATTGGTTGTCGCCTGTTCAGTTGCTAGACCGTTGCTGGTAGCGGCACTGTCGAAAATGTAGTTTAGGACTACCTCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTTCTTCACTACCCAGTTTTTCCGTTTTACGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCTAGCAGACCGATTACCAGCCCCCAGAAAGCCCCGCCAATCCCGAACAGCGTGATATTGGCTGCCGAAGCCAGGAAGGTAATCAAGGCTGCTTCCCGCGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 102807-104094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZQ01000002.1 Alcaligenes faecalis strain GZAF4 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102807 28 100.0 32 ............................ CGGTAGAAGCGCCACCACCGCCAGCGAAAAGA 102867 28 100.0 32 ............................ GAAAAACGCCAGCCTGTAGGCGCACAGGCCCA 102927 28 100.0 32 ............................ TACAGGCGGGGCCATCTGATAGCAGTCCTTCG 102987 28 100.0 32 ............................ ACACACGCGATATCAAGCTCATGGCACAGGGA 103047 28 100.0 32 ............................ TTCCTGCTCGCGCACACCAAACAGATTGATGC 103107 28 100.0 32 ............................ TGCCTCCTTAAATACGCCCCCACGAACGTCTC 103167 28 100.0 32 ............................ TTGGGCACAACTGGGCCAGCCGTGCACAAACT 103227 28 100.0 32 ............................ GCAGCGTCGGGAGATGATGCAAGCCTGGGCGG 103287 28 100.0 32 ............................ CAAGTCTGTGGCCGAGCTGGACAACAACAAAT 103347 28 100.0 32 ............................ TCGCCAATCACGGCCAGGAGCGCAACAGTTAA 103407 28 100.0 32 ............................ ACCACCGTGCGGGCGGGGATTTCTGTTAATCC 103467 28 100.0 32 ............................ AATATGCATCCATCTTGAACATGGAGGATAAA 103527 28 100.0 32 ............................ GAGCACTATGTCAGTGATGTGTTCGAGATCAA 103587 28 100.0 32 ............................ ATAGGGACGAAAGAGTTCTCCATCGTGCCGCC 103647 28 100.0 32 ............................ CAAGCAAGCTATTGTCCTTTTGGGCCAACGCC 103707 28 100.0 32 ............................ AATGACCCGAACCCTTCCTTGAACGGCGATTA 103767 28 100.0 32 ............................ TTCACAAGGCGGCACCCAGCCCAGGCTGAGAG 103827 28 96.4 32 .............A.............. CGCGAACCAGTTGACTATATAGAGTCGATGAA 103887 28 96.4 32 ...........C................ CGAAGAAGTTCGGTGCTCGTATCTGGCTGGAG 103947 28 96.4 32 ..........T................. TGAAATTTATCGCCCCCGCAGCGGGCTACTAA 104007 28 89.3 32 .................TG.......G. GTGGCTAACACAACAGCGAAGGACTGCTATCA 104067 28 92.9 0 ...........C.............C.. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTTGCTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGGGGCTGGAGCAAACGCAGTGGTTACGTGGTATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCGTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCCGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGACTTGCCTTTTATACAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAGCATGGAGTTCCTGCGGCCGGGGGGTTTAATGCTTATGGGCTAAGTGCAGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTGGTGAATTTAATTATCTTTAAGAATCAATGGCTTGGGGTTTTGTCTAAAAAAAGGGTTTTGGAGGTGGGAAAGCAGGAAAGCGCTGAAGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : ATGTTTTCACAGCGCGAAGCATCTGCGCGTGATATTTGCCTTTTTCCGAAAATTGATAATAGAATTCATTCTCATTTGAAGTGCCTGCTTCGACCCCTCCACCCCTACTTCCAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTATTACTTTTTTGATCACCTGCCAGGCATGATGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGCGCTGGCCGCACAGGCCGGGCGTTCTTCAGAGCAGTTTGAAACGGTGGTTGTGGAACAAAGCGATATACGCGCTACCGTTGCTGCGGTGGGGACTTTGAAGCCCAGTCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //