Array 1 119597-120085 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000034.1 Clostridium sp. L74 contig00034, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 119597 30 100.0 36 .............................. ATATCATTAATAATTTATAAAGAAGGTATAAAGCAA 119663 30 100.0 35 .............................. TTAAAACTCCTTAGAAAAAAGGTTCTTTTAGATAA 119728 30 100.0 35 .............................. AAGAAATCCGAATCAATCTTACTGTCGGCAAACTT 119793 30 100.0 35 .............................. GAGGAAGAAATTATAGGAGCATATGATCCTAATAC 119858 30 100.0 37 .............................. CTATTTGAATCTATTGGATTAACACAGTTTCTATTTA 119925 30 100.0 35 .............................. CTAAAGTATCTTTTTGTTCTTCTAGTTGTTCCTTA 119990 30 100.0 36 .............................. CTATAATCTTCCCAGGATACAGGCATATATTCTTCT 120056 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 ATTTAAATACATCTTATGTTACTGTTCAAC # Left flank : AAAATTGAAAATGGATAGATTTGATGTGATAATTATTTTAAGATTTCTTGCATTACAGAACGGGAAGCCTTCTCCGATAATGAGAGAAAAAGTTATAAAAGCAGTTGAATTATTTAATAAGGTATATGCTAATAACATTATATGTTCGGGTGGAGGAGTCTATAATAAATATATTGAAGCAAATATTATGGCTAATTTCGCAGAATCATTAGGTATTCCAAATAGTTGTTTGATTAAAGAGGATAAATCAAACAACACATATCAAAATATACAAAATTGAATATTACATATCAAATGGAGAAATCTAACTATCCAAGAGAATTCTCTTATCTTTATATTATTATATATATGTGGGAGAATTATGTAATGACCAAAACTAAAATAAAAGGACACTAATACTATACTGTTTTGCAACTTTCTTATATTGAGTATTATAGGTGGACAATTCTGCCTATAATTTTTTAGACTATATTTCAACAGGGCTTATATCTTCCACTTCT # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATAGCACATAGACATTGGTTTTACAAGGTTTTAAAGAAAATTTTCCAACCGATTATAATATTTTATAAATATATAAGAAAAGCCTACCTTAAGCCTTATATCTCAATAGCTAAGATAGGTTTATAAGCTAAAGTTGGTTGGGAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAGTATTCTAAACTAAAATGTTATTTACCATTTAATTCCTCTGTTTTTAGTATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTTTTTCACTTATAAATAGGGGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCTAAACTAGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 121429-122001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000034.1 Clostridium sp. L74 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================= ================== 121429 30 90.0 36 GC...................A........ TACTTCAGAAGATGAAAACGCTCAAGCAACATTAGA TG [121451] 121497 30 100.0 38 .............................. GTATAGAGTAGGTTGTAGAAATCCCACCCACTAGTAAC 121565 30 100.0 36 .............................. AATCCTGTTTTCATTCTTTTTCTAGGTTTAAAAGTA 121631 30 100.0 177 .............................. CATAGTAAAATAGCCATTCTTTATTTTTAAGAATATCATACACCCATTGATTTTGCAAGGTTTCATAAAATTTTTTCCAGGTGATTTTAATTTTTCAAAAATACATAACAAAAACCCATCCTAGACCTTATGCTTCAATAGCTAGAATAGATTTTGATTTTCAATTCACTTGGAAAA 121838 30 93.3 37 .....................A.G...... GGATTAGAAATAAGTTAGGAGAGTAGAAAAATGAAAG 121905 30 90.0 37 .............C.......T.G...... GAGATAAAAGAAAAGGCAAATTCTAAACCTTTGAGTT 121972 30 93.3 0 .......................G....G. | ========== ====== ====== ====== ============================== ================================================================================================================================================================================= ================== 7 30 95.2 60 ATTTAAATACATCTTATGTTACTATTCAAC # Left flank : TTGAAAAACCTTGTCAATGAAAAACCACCTTAATTATTATTTGTTATCTTTTCATCGTTATTTGTTTTTTCAGTACATCTCATGCTAATGTTCAATTCAGTTAGCTTCATTCTCTATGGCACCCCCATATGTATTTAAATACATCTTATGTTATTGTTCAACAAAATGGAAATTGTTCAGTCCACTTTTCAATTTTTATTTATATACATCTTATGTTATTGTTCAACCATAGCAAAATAGCCATTCCTTATTTTCAAGAATAACATATACCTATTGATTTTACAAGGTTTTACAGAAAATTTTCCAGGTGATTTTGATTTTTCAAAAGCACATAACAAAAACCTATCCTAGGCCTTATGTTTCAATAACCAGAATAGGTTTCTATTTCTAATTCGCTTGGAAAAATTTAATTAGATATACCCTATACTCATTAATGAAACTCCTTCTCCCATTCTCCAAGGAGTAAGTGACTCACGGGAAATCAGAGATTTGAGTTCCCT # Right flank : CCATAATAAAATAGCCATTCCTTATTTTTAAGAATATCATATACCTATTGATTTTACAAGGTTTCACAAAAGCTTTTCCAGGTGATTTTGATTTTTCAAAAATACATAATAAAAACCCATCCTAGGCCTTATGTTTCAATAGCCAGAATAGGTTTCTATTTTTAATTCACTTGAAAAAATTTAATTAGATATACGCTATACTTATTAATGAAACTTCTTCTCCCATTCTCGAAGAAGTAAGCGGATCACGCCAAATCAGAGATTTGGGTTCCCTGCTTAAATACATCTTATGTTACTGTTCAACGGATTTGAAGCACCAAAATCTATGGATATATACCTTGCTTAAATACATCTTATGTTACTGTTCAACCTTTATTAAGTTTATCTACGAAATTTAAATACTTTGCTTAAATACATCTTATGTTACTGTTCAACCATAGTAAAATAGCCATTGCTTAATTTCAAGAATATCATATACCCATTGATTTTACAAGGTTTCA # Questionable array : NO Score: 3.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-2.57, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTACTATTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 122436-122274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000034.1 Clostridium sp. L74 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 122435 31 100.0 34 ............................... AAGTATTTAAATTTCGTAGATAAACTTAATAAAG 122370 31 100.0 35 ............................... AGGTATATATCCATAGATTTTGGTGCTTCAAATCC 122304 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 35 GTTGAACAGTAACATAAGATGTATTTAAGCA # Left flank : ATAAGGCTTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATGGGTATGGGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATCCCCAGAGGAAAATGAAGAAAACTTAAAACGAGTAAGTTCAACAGTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGAGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGGGTATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTAAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAATTAAGCAATGGCTATTTTACTATG # Right flank : GGGAACCCAAATCTCTGATTTGGCGTGATCCGCTTACTTCTTCGAGAATGGGAGAAGAAGTTTCATTAATAAGTATAGCGTATATCTAATTAAATTTTTTCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGCTTTTGTGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTATTATGGCTGAACAGTAACATAAGATGTATTTAAATAACTCAAAGGTTTAGAATTTGCCTTTTCTTTTATCTCGTTGAACAATAACATAGGATGTATTTAAATCTTTCATTTTTCTACTCTCCTAACTTATTTCTAATCCGTTGAACATTAACATAAGATGTATTTAAATTTTTCCAAGTGAATTGAAAATCAAAATCTATTCTAGCTATTGAAGCATAAGGTCTAGGATGGGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8025-8248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8025 30 100.0 34 .............................. GATGTGAAGGTGAAAACTAATACTGATGATAAGG 8089 30 100.0 36 .............................. TGAAATTTTAGATAAAGGAGAAGAAAGCGATAGAGA 8155 30 96.7 34 ........T..................... CACAAAATTATGCTAACCTAGGTTTTTACAATAG 8219 30 80.0 0 ......T.A...T..G.A..A......... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 94.2 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TACGGTATTTTTTAGTTCTTAATTTAGATAATTTGGGATGTAACTATTAAAAGTAGGAGTACGAAGGATGTTTTTTGAAACATTTTTCAAACGTAATGGATATCAATACTCATATACAATAGTAGAATCAATAATCAATTTATTTGGCTATGACAAATTGCATAACTTAATAAAGTCATCAAATAGTTTTGTAGAGGTTTTTGGTATAACCGAAGATGAACTTCAAAATAAATGGATTGATTATATAAAAGTGAATTACTTATTAGATTAGATAAAATAGAAAATCTTAATAATCATAGCGTATATTTTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAATGTAAGGCTTAGAACAGGTTTTTATTATGTGTTTATGAAAAAATAAAATAACTTGGAAAACTTTCTACAAAACCTTGTAAAGTCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTATTATT # Right flank : TTTGTATACAATTTGATTATATTGTAAATTGAACTAGGGTGTAGGAGAGGAAGGCTATGACTAAATTTATTTTCATGATTTTACCACTGATAGCTATTGGAATTATAATTGTATTGATGATAAATAATATTAATAAGAAAAATAAAAAAAGAAATATTAAAGAAAATCAAAATATCGAGAAAAAAGAAGAAAATACAGAAGAAAATTATATGTCAATTGGAATGAGTTTAGGGATGTGCTTTGGTACAGCAATAGGTTCATCACTTATGCATACATTTGGGCACAGTTCTCTTACTTATGGTATATGCTTTGGAATGTTGGGTGGTATGCTTGTAGGGATGCATATAAAGAAAAAGTGATTTCTATTTGTTCTATTGTCTATTAAATATAATGGGAATATATTAGATGGTTGTGCTGAAGATATGCATTTAAGAAGGAATTAATGCAGTTTGGCAAAGTATATATGAGAGATGTAGAATTACGTACACAGAAAAGGAGAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 28104-28525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28104 30 100.0 35 .............................. ACAGGTGGTGCTTTTATTTTTGATCCTTTTTACTC 28169 30 100.0 36 .............................. ATTGTTCACTGCACTAACTACAATCTGGAATAGTGC 28235 30 100.0 34 .............................. CTTTATGAAGCTGTTAAAAATATGGCCGATACTT 28299 30 100.0 35 .............................. CCTCTTTTAATTTATTATCTTCTATATAAGTTTCT 28364 30 100.0 36 .............................. TTTAGTTGTGTAATAATATCCCAATATGGAGATGTC 28430 30 100.0 36 .............................. TCTAATTTCTTCAGCTCTGCATCTATGGTTTCTTCA 28496 30 90.0 0 ....................A.......GC | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 98.6 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TGAAACCTTGTAGAATCAATGGCTATATGATATTCTTATAAATAAGGAATGGCTATTTTGCTATGGTTGAACATTAACATAAGATGTATTTAAATAATGCAAAAGAATAAGAAGGTAAATACACTTCTTACGTTGAACATTAACATAAGATGTATTTAAATGTTGTAGTTTGCCCATAAACAGTTACCATTTGTCCAGTTGAACAACAACATGATATGCATTTAAGCAGGGAACCCAAATCTCTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGAAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTTAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGACCTAGGATGGGTTTTTATTATGCATTTTTGAAAAAATAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAACCCAAATCTCTGATTTGGGGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAATAACATGAGATGTATTTAAATTGTCCATCTATGATGATTACGGCTCCAGCACCACCGGTTGAACAATAACATGAGATGTATTTAAATACTATTGCTGCACTTCGGTATCCTGTGTTTGTTGCGTTGAACAATAACATGAGATGTATTTAAATTTTTACAAAAATACAAGTAGGATCAGGGCAGATTGGTTGAACAATAACATGAGATGTGTTTAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 28799-29215 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28799 30 100.0 36 .............................. TGTCCATCTATGATGATTACGGCTCCAGCACCACCG 28865 30 100.0 35 .............................. ACTATTGCTGCACTTCGGTATCCTGTGTTTGTTGC 28930 30 100.0 35 .............................. TTTTACAAAAATACAAGTAGGATCAGGGCAGATTG 28995 30 96.7 37 ......................G....... ATGTCATATTATTATCTGGAACTCCATATGTTTTTCC 29062 30 100.0 28 .............................. CTGGCAGGATCATTTACTATTATTTTTA 29120 30 93.3 36 ........T......A.............. TAGTCCTTCTGACTCATCTGAGTTATATTCGCGAAT 29186 30 80.0 0 ...............A.A.....A...TGC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 95.7 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : GTTGAACATTAACATAAGATGTATTTAAATCCTCTTTTAATTTATTATCTTCTATATAAGTTTCTGTTGAACATTAACATAAGATGTATTTAAATTTTAGTTGTGTAATAATATCCCAATATGGAGATGTCGTTGAACATTAACATAAGATGTATTTAAATTCTAATTTCTTCAGCTCTGCATCTATGGTTTCTTCAGTTGAACATTAACATAAGATATATTTAAGCAGGGAACCCAAATCTCTGATTTGGGGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAAAGAAATATTAAGAGTGAATATAAAGATATATTAGCATGAACATTAACCGAATAAGAACTAATTTTAAAGCATAGTTTATTTATGTGAATACATACTGAAACTATGCTTTAGAAATATTCATAAATATGAGTAAAAGTTTATGTTTGTATATTATGTTTATATGTTTAAATACCTCATTCTATGGTAATATAATAGAGTGAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAAAAGCATTATATGGTGGACATATCTAATAAGATAGATAGAATACTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGTAAAACAACTACTTTGTATATGTTAGAAAAAAGATTAAATAGTATGGAAGAATACTTACCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTAAGAAAATTTTTAAGCAGCATAATTATGCAAAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 31245-31669 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31245 30 100.0 36 .............................. TTTATTTTTTGTTCCTTTCTTATATCCAGATATTAA 31311 30 100.0 37 .............................. CTTCTCTTACATTGCTCTATATATTCAATTAAAACAT 31378 30 100.0 36 .............................. AACTTACTTTTACAAAATAGTAAGTTTTATCTTTTT 31444 30 100.0 36 .............................. ATTAGTGTTAGGTCTTCCATACCAATAAGATTTCTT 31510 30 100.0 36 .............................. TTTTCTCTGGTGCATCAAGTGCTGCTTTTAATTCAC 31576 30 96.7 34 ...............G.............. GCTAAATATATTCCTGTACCTACTCCATCAGCTT 31640 30 80.0 0 A.......G.......G.......C...GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 96.7 36 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : TTTAAAGAAGTAAGAGGCGGAGAAGAAAAAAGATTTGATATAGTTATAACCTATAATAAAAAGATGTATATTCTAGAACTTAAAATATGGAGAGGGGAAGAATATCATAAAAAAGGTTTAATACAACTAGCTGAATATTTAAATCAATACGGATTAGATAAAGGATACCTTCTAATATTTGATTTAAGAAAATCCACAAATCTAATAGGTGAAGTAGAAGAAAATTATATAGGCATAGAGAATAATAATAAAAAAATAATACAAGTTTATTGTTAGAATAATATATAAAAAATGAGTAAAGATAAGAACAGGACTCTAAAACTTTTTCCAACCAATTCTAATTCAAAAACCTATTTTAAGCATTGAAGTATAAGGCTTAGAATAGGTTTTTGTCATGCATTTATGAAAAATAGAAATCGGTTGGGAAAGTTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAATTAAGGAATGGCCATTTTACTATG # Right flank : CAGGAAACCCAAATCTTTGATTTGGTGTGAGTCGCTTACTCCTTCGAGAAGATGAGAAGGAGTTTCATAAATTAAATTTTCCCAGGGGCAACAAATTTTAAAACTTATTCTAGCCATTGAAATGTAAGGCTTATAATAGGTTTTTGTTACGTATTTTTGAAAAATCAAAATCATTTGGGAAAATTTCTCTAAAACCTTGCAAACTCAATGGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTGCTATGGTTGAACAGTAACATAAGATGTATTTAAATTTTAATAATTTATTTGTAATAGCATATTTAAATAAAGTTGAACAGTAACATAAGATGTATTTAAATTTAATATTCACCTCACAATTTCTTTGAATTGTAACTGTTGAACAGTAACATAAGATGTATTTAAATTAATGTTTATCTGTAGCAGTATCCTTAATCTTTTTAGTTGAACAGTAACATAAGATGTATTTAAATAAAATAGAGAAAGAAGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 31923-32214 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 31923 28 100.0 38 ............................ ATTTTAATAATTTATTTGTAATAGCATATTTAAATAAA 31989 28 100.0 38 ............................ ATTTAATATTCACCTCACAATTTCTTTGAATTGTAACT 32055 28 100.0 38 ............................ ATTAATGTTTATCTGTAGCAGTATCCTTAATCTTTTTA 32121 28 100.0 38 ............................ ATAAAATAGAGAAAGAAGCAACTCCTTAATTGGAGCTA 32187 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 100.0 38 GTTGAACAGTAACATAAGATGTATTTAA # Left flank : AATAGTAAGTTTTATCTTTTTGTTGAACAATAACATAAGATGTATTTAAATATTAGTGTTAGGTCTTCCATACCAATAAGATTTCTTGTTGAACAATAACATAAGATGTATTTAAATTTTTCTCTGGTGCATCAAGTGCTGCTTTTAATTCACGTTGAACAATAACATGAGATGTATTTAAATGCTAAATATATTCCTGTACCTACTCCATCAGCTTATTGAACAGTAACATAGGATGTATCTAAGCAGGAAACCCAAATCTTTGATTTGGTGTGAGTCGCTTACTCCTTCGAGAAGATGAGAAGGAGTTTCATAAATTAAATTTTCCCAGGGGCAACAAATTTTAAAACTTATTCTAGCCATTGAAATGTAAGGCTTATAATAGGTTTTTGTTACGTATTTTTGAAAAATCAAAATCATTTGGGAAAATTTCTCTAAAACCTTGCAAACTCAATGGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AGCAGGGAACCCAAATATTTGATTTGGCGTGAGTTGTTTACGCCTTCGAAAATTGGAGAAGGAGTTTCATTAATGAGCATAGTATATATAATTAAGTTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTAGTCATTGAAACATAAGGCCTAGGATAGGTTTTTGTTACGTATTTTTGAAAAATGAAAATCGCCTAGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACATTAACATAAGATGTATTTAAATATTTTTTTATATAATAGATAAAATATAGGTGGTGGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTTTGATTTGGCGTGAGTCGCTTACTCATTCGAGAATTGGAGAATGAGTTTCTATATCTAATTAAATTTTCCCAAGTGAATTTAAAATTAAAATATATTCTAACTATTGAAACATAAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 6 37228-37789 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37228 30 96.7 36 ...C.......................... CTATCACGGGTTGTGTAGAAAAAAACGCTTTCCGGA 37294 30 96.7 35 ...C.......................... TTTACTCACCTCTCTTATAGATCCCGTGGAACACC 37359 30 100.0 38 .............................. TCTGTTACATGAGAATAAGTTCTCATAGTTTGTTCTAC 37427 30 100.0 37 .............................. GCTACTCTATTCTTATCTAGCTTATTTGTAGCCCATT 37494 30 100.0 35 .............................. GAGTTAATAGAAGTTAATGTCCCTTTAATTGTATC 37559 30 96.7 37 ............T................. TATATCTCAGAAGTCTTATGAGCGTGGTATTCATCAA 37626 30 100.0 37 .............................. GAGTATGCTTCATTGTAGGCTAATCCCTGTAATTTAG 37693 30 96.7 35 ........A..................... ACGCTTCTTGACACTGCACCTGTATAACCATAATT 37758 30 86.7 0 .C....T.........G............A | TA [37782] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.1 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GCAGCATTTGCACAGTCAACAGGCAAAGGTAATTCAAATGCTCAATCTAATGAAAGCCAAAATGCAGATGATAATCAAAATTATACAGTGTATAAAACCAGAACTGGATCTAAATATCATAGTTCAGGATGTAGATATTTAAAGAAAAGTTGTTATGAAACAACAGTATCACAAGCACGAAATGAAGGTTTAACTCCATGTAGTGTGTGCAATCCATAGCATATAATAACATGTTAAGCATAAGTAATAATTGTACTTTCTAATATATTGATAAATGTATTATATTAATATACTTAATTAATATAATATATATCTAATTAAATTTTTCCAAGTAAATTAAAAATAAAAACCTATTCTAGCTATTGAAATATAAGGTCTAGAATAGGTTTTTATTATGTATTTATAAAAAATTAAAATCACCTGGAAAAATTTCTGCGAAACCTTGTAAAATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AATGGTAATTGTAGTTTATGCTATAACGACCATTTTTTTATATATTAAAAGGAATTTTTTAACATTCATAGAATATTAAATATAAAGGTTTCCCAATAGGTTAATTATAGGCATCCCTAATAATACAAAAAGAACCCATTTATTGGGGTTCTTTTATCGTGGAGTTAATTTTACATATCGGTTAGTGTAGTATTGGATTATTTTTATTATATCCAGGTATAACAATTTTAATCAATCGGAAATATATAATATATTAATTTTAAAGATACTTCTATAATGGGAGTACATTCTTTTTTATTTTGTTGAACAACAATGTAAAATGTCTGAATTTTTGGGAAAAATTATAAAAGGAAAAGCGTATAAAAATAGAATTTATATAATAAGAATCTGTTAAGTTAAAATGATTTAACAGATAAATAATGGCAGTATGTTTTTCTACATGAAACGCATAATAGCCTATGAAAGCATTTGCGAATGGCATTGAATTTTTTAATAAAGTA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTCAACATTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 50790-51343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50790 30 100.0 36 .............................. TATATTTTTCTTCTGGCTTGCATTGCTCTATTTCCA 50856 30 100.0 36 .............................. GGAACTTTGAATTCTTTATTCTTTTCTGCAAACTCA 50922 30 100.0 34 .............................. AAGATAACGTATGATGGCGTAACAGATATAATTG 50986 30 96.7 35 ........G..................... TGTTTTATTTCTAGCTGCTTATAAGATTGGATTAT 51051 30 96.7 36 ...............G.............. ATGAAAGGTGAAGTAAATATTACAAATAACAATTTT 51117 30 96.7 35 ...............G.............. GCTTATTTGTGAAGAATTAGCTGATTTAATCGCTA 51182 30 96.7 38 ...............G.............. GCGACACCTGCGATTTCTGTTGCGGATTGAGGCATTAG 51249 28 80.0 37 --......T...T...G.G........... TAAGTTTACCGAATGTCCTACCGTTGATTGAAGTTTA 51314 30 86.7 0 A.......T.......G...........G. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 94.8 36 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : TACAAGGCCTAGGATGGGTTTTCGTTAAGTGTTTTTGAAAAATCAAAATCACTTGGAAAACTTTCTGCTAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACCATGGTTGAACAGTAACATAAGATGTATTTAAGCTCCTGGAATGACTGTAAGTTATACTCTTGTTGAAGGTTGAACAGTAACATAAGATGTATTTAAGCAGGGAACCTAAATCTCTGATTTGGCGTGGGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATAGAAACTTATTCTAGCTATTGAAACATAAGGCCTAGAATGGGTTTTTGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAATTTTTATAGAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TAGAGAAGACAAATATCTGATTTTGCGTGAGTCGCTTACTCCTTTGAGAAAGGGACAAGGAGTCTTATTATAAATTAATAAGTATATATTATATCTAATTAAATTTTTCCAAGTGAATTAAATATTTAAACTTATTTGAGTTATTGAAATGTAAGAGTTAGAGTAGGTTTTTGTTTTGTGTTTTTGAAAAAGCAGAATCACCTGGAAAAATTTTAATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATCATTATTCCTTAAAGTGTAATCCAAAAGAAAAAGTGTTGAACAGTAACATAAGATGTATTTAAATAATACTAATGTTAGTATGCTCGGAGAATCTTTTAAGTTGAACAGTAACATAAGATGTATTTAAATAAATCTACAATTTATTGTGTTACTAGTTGATTTTTTGTTGAACAGTAACATAAGATGTA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 8 51624-51849 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51624 30 100.0 35 .............................. CATTATTCCTTAAAGTGTAATCCAAAAGAAAAAGT 51689 30 100.0 35 .............................. AATACTAATGTTAGTATGCTCGGAGAATCTTTTAA 51754 30 100.0 36 .............................. AAATCTACAATTTATTGTGTTACTAGTTGATTTTTT 51820 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : AATAACATGAGATGTATTTAAATGCTTATTTGTGAAGAATTAGCTGATTTAATCGCTAGTTGAACAATAACATGAGATGTATTTAAATGCGACACCTGCGATTTCTGTTGCGGATTGAGGCATTAGTGAACATTAATATAGGGTGTATTTAAATAAGTTTACCGAATGTCCTACCGTTGATTGAAGTTTAATTGAACATTAACATAGGATGTATTTAAGTAGAGAAGACAAATATCTGATTTTGCGTGAGTCGCTTACTCCTTTGAGAAAGGGACAAGGAGTCTTATTATAAATTAATAAGTATATATTATATCTAATTAAATTTTTCCAAGTGAATTAAATATTTAAACTTATTTGAGTTATTGAAATGTAAGAGTTAGAGTAGGTTTTTGTTTTGTGTTTTTGAAAAAGCAGAATCACCTGGAAAAATTTTAATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTTGAATGAGTATGAAAAATTAAATGTAATTTAACCATAACATATGATGTGAAATCACTATAAAGATTATAATCTTTATAGTGATTTTTTAATATTTAGAAAAATAATATGCAACATTATGATTATATGGAAAATGTTGATTTAATATATAAAATGTGGTAATATGGAATAAAGATTAAGAAAGTTGTTAATATTCAATAAAATATAAGCGCAGACTGGAGGTGAAATAATGAGAGTATATGAATTAACACTAAAGATATTTCTTCTTAAGGATTTAACTATGGACAAGTCTTATGAAAAATTAACAGAATTGATTGATAAATCTCTATGCAAAGATGATGAATTATTAGAGTTACATAATCAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTAGAAAAAGACAAAATATATAAAGCTGGGAATATATATTCAGTAAAAATAAGAACTATAGATGAGAAAATATTAAAGAATTTCAAAACTCAGTTAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 61243-62131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITJ01000018.1 Clostridium sp. L74 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 61243 30 100.0 36 .............................. TAAGTAGTTTCTTCTATATTTTTTATGTTTTTTAAA 61309 30 100.0 36 .............................. TTTATTTTTTGTTCCTTTCTTATATCCAGATATTAA 61375 30 100.0 36 .............................. TAAATTCCTCATCAAAGATATTATTGGGTGTTTGAA 61441 30 100.0 36 .............................. AACAGTTGGCGGTATAAAATATTGGGACTGTAGTTC 61507 30 100.0 36 .............................. TCTAATGCAACTGCATAAGGAGTAATTCCATCTATA 61573 30 100.0 37 .............................. TTATAAACACCATGCCAGCCGAATGTGGGGTTATATA 61640 30 100.0 36 .............................. AAGCTTAAGCTATTAAAATCATACGCTCCTCTTAGC 61706 30 100.0 35 .............................. AAAAGATTTTGCTGAATTCTTAGGAATAAATCCAT 61771 30 100.0 36 .............................. GTGGTTGGTTTTGGTAGTCCTGTAATATTTGCTGTG 61837 30 100.0 35 .............................. TTGTTAATTCCTAATCTTTCTCTTTCTTTTAACCA 61902 30 100.0 37 .............................. TTAGATTATAATCTTGGGTTAATCTAGTAATTGGATA 61969 30 100.0 36 .............................. TGGACCTGCAGAATTAAAAATAGATATAGATAGCTT 62035 30 100.0 37 .............................. TAAGTAAAGAATCTATAATAATAATCTATATTATTAA 62102 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GAAGGAGAGAATGTAGATGGGAAAAAAGTTTAATTATAATTATGCTTTCGTTTTTTATGATGTTAATGAAAAAAGAGTGAATAGAGTATTTAAAGTTTGTAAAAAATATTTATCACACTTTCAAAAATCTGTTTTTAGAGGAGAGATAACACCAGCAAATTTAATTTTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGTTAATGAATAATAATGTATATGGAGAAGAAATACTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAGGGAAAACAATTTTAGTTTTCCCAACCGTTTTTAGTTTGACAACCTATCTTAAACATTGAAATACAATGCTTAAGGTAGGTTTTTGTAATGTCTTTTAAAAATTTCATAATCGGTTGGTAAAATTTTTAGAAAACCTTGTAAAATCAGTACTTCTATGATATCCTTAAAAATAAGAAATGGGTATTTTACTATG # Right flank : GAGATTACTACAAAGACTTCTACAAAGATTACTAGGTTGAACCTTAACATAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //