Array 1 32485-32337 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000023.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32484 28 100.0 32 ............................ GACAGGTTGTTCCGCATCTTGCGGATGATGAC 32424 28 100.0 32 ............................ CTGCAAAATCAGTAAAGTGGGTTAGGTCTATC 32364 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGAGGGGTCTTATTTACTACAGGAAGCTGGTGGAGCTGATAATGTTGTTAATTTTTCACTTAATGATCGTGTGGCATTACAGTGGGATATTCCGCAAAATAAAACCATTTCATTAAGGGCTAGGGCTGCTACAGCAGGCCCTGGGACTTGGACCACCACTGCAACTTATATAGGGGTATCAAGACCTCGCAATATCGCATTTAGCTACATAGTGAGAGCAGAGTAATGGCTGAAAATACGCTTGATAGCCAGAATATAGAAGTATTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGCAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGAACCTAAATTTTACCCTTTTTTAACAGCCAACTATAATTCATTGATTTTTAATGAAATTTAACCTCTCTCATAAAAAAGGTTTTTTTTGCTTTTGGTAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : GTCTAATGGAGGTGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAAAGTATTGTTGTTAAACACAATGCTGCAAACAAAAACAAGTAATGCAGAGCTAGCGAGAAAACTAGGAACGCGTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGATAGAAAGCGCGTCAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTATACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCGTCGGTTCTACGAATAGAGAAAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCGATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGGCGGATTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1147-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000017.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1146 28 100.0 32 ............................ ATTTCACGACTGAGTGATTGATAGGGTGTAGT 1086 28 100.0 32 ............................ GGCTTTTGCCGAACCCCAGTCAAGCTCTGTAA 1026 28 100.0 32 ............................ AGGGTGACATTACGCCACTGGCCTTTACCATG 966 28 100.0 32 ............................ CTTGCCAACTCCCACACACTCTACCCGGATCA 906 28 100.0 32 ............................ ACCGGAGAATGCTTCCATATCTGATGCACCCG 846 28 100.0 32 ............................ GCCATCCGGGGGCAATAAATATGACTATGAAC 786 28 100.0 32 ............................ TGTATCAGTATCATTAAACGGACGAGTTGAAG 726 28 100.0 32 ............................ GTTTTCACGCAGATTAAGCAGAAAGACATATA 666 28 100.0 32 ............................ GATTTCGCAGTGACCCACAGATTAAAATGTTT 606 28 100.0 32 ............................ TTAACCTGGTCTACTGCACCAGCATCGATTAG 546 28 100.0 32 ............................ ATTTCTAACGCGCCGGGTGAAATTGATAACAC 486 28 100.0 32 ............................ TGCTCATAACATGCTTATTGGGATGGATGAAA 426 28 100.0 32 ............................ GGATGTTGTAGAGCCGCTGGATTATGAAAGCC 366 28 100.0 32 ............................ ATAAATCAGCCCTTATCTTGTCGTGCAATTCC 306 28 100.0 32 ............................ CATGAATTTTTATCCTCTGTTTTACACCTGCC 246 28 100.0 32 ............................ ATTACTTAGTGTTTGTGTGATCATGAGTTCAA 186 28 96.4 32 ...........T................ CAGTAAAATTGACCCATGGGGAGATTTACCGC 126 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAAACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCTGTGAGATAAAAGGTGATAATTTTTGTTGATGACAGAGATCAGTGAATGGCTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATGCCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAACG # Right flank : ATAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7732-6384 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000017.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7731 28 100.0 32 ............................ TCTTACGTGCCAGAAGGCAAGAGGACGCTAAC 7671 28 100.0 32 ............................ CACAGTAGTTGTAACCGATTCATTTAAATTGG 7611 28 100.0 32 ............................ GCCGCAGCAACTAATCGACTAGTAATATCTGA 7551 28 100.0 32 ............................ ATTCAGATCAATCGGTACAGGAATGCCGGCGA 7491 28 100.0 32 ............................ AGGAGGCAATGCAGAAGAGAAGCCAAATTCAG 7431 28 100.0 32 ............................ GGTCACTTCGGGATAGAGTACTCCGTCAAGTG 7371 28 100.0 32 ............................ TGATGTTTTAGTATTCGTATCTAACTTTATGA 7311 28 100.0 32 ............................ CGGAAAATTAAATACCTTGCAACTTCGCATGA 7251 28 100.0 32 ............................ ACAATAAATTCCTAGATGCAATATTGCGTTCT 7191 28 96.4 32 T........................... GTATGAGCTTTGGGAAATTTTTGATGCCGCAG 7131 28 100.0 32 ............................ GGCACAAAGGTGACCGAGAACATCGCAACCCC 7071 28 100.0 32 ............................ ATCCGCAGGTTCATTAAACGACACTTGCCAGT 7011 28 100.0 32 ............................ CAAATGGCTCAAAAGTTTATATTTCAAATAAA 6951 28 100.0 32 ............................ AGTTCACTACATTGTTTTCGCCAATTATTGGT 6891 28 100.0 32 ............................ GATTTAGCTGGAGTATTTTTTGTTTTCTGAAT 6831 28 96.4 32 .....T...................... GTGACATGCGCAAAACAAAGACGACTGATGCT 6771 28 100.0 32 ............................ GCTTAAACAGAATCATGGGGCGCTCTGGCATT 6711 28 100.0 33 ............................ TGTCCAGACGCATGGCCCGGCGCAAATCTGCGA 6650 28 100.0 32 ............................ TCATAACAATCACCTTTTATTTATTAACTCAC 6590 28 100.0 32 ............................ TACTACGCCTACTACGAAGGGTATGACTGTAA 6530 28 100.0 32 ............................ AGAGACTCAACCAACGGTTTCCCTCAGTCATG 6470 28 100.0 32 ............................ GTTGCTATAAATTTGGTCCAGTGAGGGACTGA 6410 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATATTGGCAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAGTTATTTGGTTTCTAATCAATAGATGAAGGGATCCTGACACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCAAAGTGTTCAAAATAATGTTTGAATTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAATATCTTAAGGCAAGTTTAGTTGCTCTTATGTCTGTTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCCAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGGTGGTTGAAGTCATTTTTTGTTTTAAATTGCAAATGTGACTTCATCTATTTCAGGTTAGCTGTAGTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2028-1518 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000071.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2027 28 100.0 32 ............................ TGTACGGCAGTGAACTTATTGGAATTTAAAAT 1967 28 100.0 32 ............................ AGAAGCGACGATGATACAGCGGTCATTAAATT 1907 28 100.0 33 ............................ TTACGGCCTCTTTGAGTCGCTTGAGATATTCAC 1846 28 100.0 32 ............................ TGGCTGGACGATGGTTTCCTGATAGAAGTTCA 1786 28 100.0 32 ............................ AATTAATCGAACCCATAATGCCAGTTTAGCGG 1726 28 100.0 33 ............................ TGCTATAGATGAAGAAAAGCCGAGCTTAACTAA 1665 28 100.0 32 ............................ TCATGAGCAATGCGCTGGCGTTCTTTTTCAGC 1605 28 96.4 32 ....G....................... GGCAAACAAATGACCCAGCTACTGGAATACGA 1545 28 85.7 0 .......................TT.TT | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCCTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTATTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGCGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTGTTAAGCTGCACTGTCACCAGATAAAGTAAATTAGTCATGATGAATTAAATCACCATTGAAAATCTGCCTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGATGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCCTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAACTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : AACGGAGGCAATCATGAGTCATACCCGTTACGAAACTAATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGAGCAGGTAAACTCTCTGAGATCGATATAGTTAATATTGCCGAGAAAATTGAGGACGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGTCAGTTTTGTTGTCCCATCTTTTGAAGTGGCAATTTCAATCTGGGCGTCGTGGTTCAAGTTGGCAACGAACTATTAAAGAGCGGAGAAAAGCGCTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTATCGATGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTCTATCCTGAGTAAGCTCCAATGAGTTGACTTATTTTGACGCACTGACTTCGATTGGTGCGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5799-6788 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000057.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5799 28 100.0 33 ............................ CTCCTTTCTTAGTAATTTTTCCTAAAGATTCTT 5860 28 100.0 32 ............................ TAGGGATCCCCCTTTATGCGGTCAAGCGTATA 5920 28 100.0 32 ............................ AGGTAGAATGGACGGAAAAAGTTTATCACGAA 5980 28 100.0 32 ............................ ACCACGAGTTGTCAGAAATCACCGCTCAACGT 6040 28 100.0 32 ............................ TCTTCGATGCAGTTCAGCAAATAAGCGTCTTC 6100 28 100.0 32 ............................ TATATTAAGCGAATGGAGCCTGTCCGAATGGT 6160 28 100.0 32 ............................ TGCAAGCCTAATACCTGCTGATTGATTACCGC 6220 28 100.0 32 ............................ AAGAGTAGAACCACTAAAAATAGAACCTCCAA 6280 28 100.0 32 ............................ TTTAAAAAATATTGCGACGAACACATTGGAAA 6340 28 100.0 32 ............................ AGTCACTACCAGTAAACGATGCACATTCAATA 6400 28 100.0 32 ............................ GGCTGAAAAAAACGAAGAGGTTGTGGCTCTTA 6460 28 100.0 33 ............................ AAGGCTAATGCAATTCAAGAATATGCTGATTAT 6521 28 100.0 32 ............................ TCCATAATTCAGCCCTTAGTTTGTCATGCAAT 6581 28 100.0 32 ............................ TCCGGCGCGGCTGGATGAATAAATTCAGCCCA 6641 28 100.0 32 ............................ TTATGATTATGTGGAGAACAGGCCAAATTCCG 6701 28 100.0 32 ............................ ACCGAAAAGGTCAATACCGCCGCAACCACCGT 6761 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGTCAATACAAGACAAACCAATACCGGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGATAGCCTTTGGGAACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGTTGGTTGCAGTCGCTCCCACGTTTTTCTGCGTCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1052-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEU01000085.1 Photorhabdus bodei strain C-CN4 C_CN4_9_scf0085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 1051 28 100.0 32 ............................ AATCCGAGAGCCATCTGACCAATATCATTGAT 991 28 100.0 32 ............................ TCAATCCACAATATCGAATGATACCGATTAAT 931 28 100.0 32 ............................ AGATGTTAATAACAGGGGAAGCCTTCTTGTAG 871 28 100.0 32 ............................ TTTAGGAACGTTAGCAGATAAAGCAACACGGA 811 28 100.0 32 ............................ AGGAGCTTCCTTGCTCCCGGATGAGCCATAAC 751 28 100.0 32 ............................ TGATGAAATTGCTCGCGTCGCGCGATGGGAAC 691 28 100.0 32 ............................ TGGTTTTGATGAACTGTGAGCATTTGTATATA 631 28 100.0 32 ............................ TATGAGACATTAGCCAGGGACGACCATCAGGA 571 28 100.0 32 ............................ ACTTACCTTAGGGATCGGAGAATAAGACACTT 511 28 100.0 32 ............................ TCTATTATCTTGTGCGTATTTTTGTGCTTCTG 451 28 100.0 56 ............................ GTGGAAACAATTATGTGGTGGTGAAGAGTGGAGTGCACTGCCGCACTGCCGCACTG 367 28 92.9 33 CC.......................... AGATAGCTAGTGCGTTCCTTGCACTTTATTCGC 306 28 100.0 32 ............................ TTAAATGGCTACCATCCATGCTATGCACAAAG 246 28 100.0 32 ............................ GTATTGCTGTAAGTGAAACCTTAAACTTCTTG 186 28 100.0 32 ............................ TTGATCAAGAACAAGCAGATAGAAATGTCTAC 126 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ======================================================== ================== 16 28 99.1 34 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAGACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCAGTGAGATAAAAGGTGATAATTTTTGTTGGTGACAGAGATCAGTGAATGGTTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGAATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAATGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATACCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAAC # Right flank : ATAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //