Array 1 2443092-2442605 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKW01000043.1 Azospirillum palustre strain B2 Scaffold_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2443091 37 100.0 39 ..................................... CAAGGAAGGTGACGTCCTGACCGGCGATCCGGCCACGTC 2443015 37 100.0 37 ..................................... AATCCGCGGTCCAATCGGGTCTATGGATACGGCCAGG 2442941 37 100.0 39 ..................................... ATCGCCGGCACGATGACATTGGTCGCGGTCCCGACGTAC 2442865 37 100.0 39 ..................................... AGGCCATAGCCGGCGATGCTGGGCTTGGTGACGAGGCGG 2442789 37 100.0 37 ..................................... AGGTAACCGTCGATGCGGACCACCGCGCCGATTCCCT 2442715 37 91.9 37 ............A....T..................A TGGACATAGAGCTGGACATAGCCGGCCGACTCCTCGA 2442641 37 94.6 0 ............A....T................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.1 38 GTCTTCCGAAGCGGAAACGCTTCGGCCTCATTGAAGC # Left flank : GAACCGGAGCGGGTCAGCCCCGCCACCCGCGCCCTGCTCGACCGCCTGTCCGGCCCCTTGCGCGCCGACGCCAGCCTGTGGTGGACCCGCGGCGCCGGCCGGATCGCGCCGTCGCTGCTGTCCTGCCCCGGCCTCCCCGCCGGCCCCCGCCTGACCGCCTTCCTCGACGGCGCCTGGACCCGCTGGGGCTGGGAGAACGCCGACGAGGGGTAGGGGGGCGGTCGGCGGCGGTCGAGCCCGTGCGGCGGGCGCATGCGGTGGCATCGTCCCCCGCGCCATGATACCGTTTCCATCGCCGCTGCCTGGGTTGCTTGCGAGCGGTTCGGCACAAGCGAAACCCCGACGACCGCTCGCGCAGGCGGGGCCCATGTTTTCCTTGGGATCTTTGACATCGTCCAGAACGAAAGCGAACCAGAAAAGCTGACCGCCCCGACAGCTTTCCGCACCGCTCGATTCCACGGCGTATTGCCGTTGAGTCCGAAGGAGATGACGGCGGGGCT # Right flank : TGTTCCCCCCGTCCCGCCGGCATCCTCCCCCCGCCCGCCGCTCTCCATCGCGGCGGGCGGGGCTGTCGGGCCGAACGCGTTACGGCGTCCCCGCCATCTCGCGGTCGAAGCGGGCCAGAGCCTCTTCCAGCCCCCACTGGACCCGCGCCTTCTCGCTGCGGGCGGCCACCGGGCGGCAGGCGTCCTCACGCATACCGTCGCCCACCGGCGGCGTGCAGCCGGGGGCCGACCACAGGCTGTCGCCGGGCAGGAAGCTGTGCTCCAGGCTGGCGCGGGCCAGCCCGACGAGGTCGGCATAGCCGAAGCCGAACTCCTCCACCGCGCGTTGCAGCTCGTTGGTCAGGTCGATCCGGCTGACGCCCTCGTCGTCGGTCGACAGCACCACCGGCACCCCGGCGGCGCGATAGACCGGCAGCGGGTGCGCCTTGCCGCTGACGCCCAGGATCTTGTCGTTGCTGGTCAGGTTGATCTCGACCGCCACCTTGCGCCCGGCCATCGTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCGAAGCGGAAACGCTTCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.40,-14.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 263814-267416 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKW01000037.1 Azospirillum palustre strain B2 Scaffold_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 263814 32 100.0 34 ................................ GTCCAGCTCCTGCCGCCGGAATACACGGTCGCCT 263880 32 100.0 35 ................................ CACCATGCGGCGAAGGCGTCGCGGCCCTGTGCATG 263947 32 100.0 33 ................................ ACGGTCACTGCGGTGAACGAATGGCGCTTGTCC 264012 32 100.0 34 ................................ GAATTTGCCATAGGCGTAGCCGCCTGGGCCGCCA 264078 32 100.0 34 ................................ TCGCCCTGCACCACCAACGCCGCCATTCATGCCG 264144 32 100.0 34 ................................ GCCCGCCAATTCGACAGACGATCACGGTCCATGT 264210 32 100.0 35 ................................ CTCTTGGTTTACGACCCTTCCGACGATCCGACGGT 264277 32 100.0 34 ................................ GGTTTCGGCCGGGCAAGTGTCCGCTTGCCGACCG 264343 32 100.0 34 ................................ ACCAGCCAGCGGCTGGAGGACCAGCACACCGCCG 264409 32 100.0 34 ................................ CCCAAAATACAGGAACAAGCCATGGCCCTCACAG 264475 32 100.0 35 ................................ TCGGACATCCAGCAGGCGAGGGCGGACGACCGAGA 264542 32 100.0 33 ................................ TAGGCATCGTGTCGGGCTGCCGATGCCGCGGCA 264607 32 100.0 34 ................................ ACCCACTTGTCGAACTCAGCAGCGGCGCCAGCAT 264673 32 100.0 35 ................................ ACCAGGGCGACAGCGGTGGCACACACAGGTCTTGT 264740 32 100.0 34 ................................ GCATCTCATACGTGACCGTGACCTTCAAGCCATG 264806 32 100.0 34 ................................ TGCGACACCTCATCGGCAAGCCTCTGGTCCGCCT 264872 32 96.9 35 ....................C........... CAGATCGTCATCTCGGCCAAGGACCGCGCCTCCGG 264939 32 100.0 35 ................................ GCGCATCTACCACCCCGGCCGCGGAGTGACCGCCA 265006 32 100.0 35 ................................ TCCATAGCGAGGCCCGTGCTTGGCGAATTGCGCGC 265073 32 100.0 35 ................................ ATCATTCGACGCGCGACGCAGACGGCGGAGATCTG 265140 32 100.0 34 ................................ AGCCTCAGCGCAACCGATCATCGCGCCGACCTCG 265206 32 96.9 34 ..................A............. AATGACAGCCTGTCGCATGTCTTGGTGCATGAGA 265272 32 100.0 35 ................................ TACATGTGGACCGGCGGGGCGCCGCAAAGCATGGC 265339 32 100.0 34 ................................ CGTGCCCAGGTGGTCACCCGACGTACCTATAACC 265405 32 87.5 34 .....CA..........G........T..... CCCGACTGGCGCGCGCATGGCCAGATCGCGGCGG 265471 31 87.5 34 .....C.....T.-...G.............. CGGTTGATTGTGCGGGTGGGGGTAACGTCTTCGG 265536 32 87.5 35 .....C....AT.....G.............. AAGGCGATCACAAGCGCCATGGTCGACGCTGTGAA 265603 31 90.6 34 .....C.......-...G.............. ATGACCCGTTATGGCTATGTCGAGTTGACGAATA 265668 32 87.5 35 .....C....AG.....G.............. AGGCAGGTGCCTTGACCACATCGGCCTGAGCGGCA 265735 32 90.6 38 .....C...........G.T............ TTCAGCGTGGCGATGTCCTCGACCGCCTGCGTCATCGG 265805 32 96.9 36 .....C.......................... GGCATGCGCCCACAGTCAGATGCGGAGATTCGTGCT 265873 32 90.6 34 .....C...T.......G.............. TGGTAGGTGACGACGACGGTCACGCGGGCGGGCG 265939 32 87.5 33 .....C...........C...C....T..... ACCTATGGCTGGAACGGCGGCGGCGAACTGACG 266004 32 87.5 35 .....C....AT.....G.............. GGCACGGACCTGCAACGCTCCGCCGCGACCTGGAG 266071 32 84.4 35 .....C..T...AT...G.............. GCCCTGATGCTGGAGCGCGAAGGCCCGTCGCTGAT 266138 32 81.2 33 .....C....A.....AG...G..G....... AGGTGCGAGGGGCAGCGGGCGCGATTGTCCCGG 266203 32 81.2 34 .....C....AT.....G......GG...... GGCTGCGCTGCTCGGCGATGACGGCGAGGAAATG 266269 31 93.8 33 .....C...........-.............. TCCCAATAATCGCCGTAGGCCTGGATTTGCAGA 266334 32 87.5 34 .....C....A...A..G.............. TGGTTGGCGGCAGAGGACGAGCCGCCGAACAGGC 266400 30 87.5 34 .A...-...........-......G....... ACTGGCTCAACGCCTGGTGCGGGATCACCAGCTA 266465 30 87.5 34 .............--..G......G....... CACAGCCGGGCGCGGCCGGTGCGGTCAATGTCTA 266529 32 78.1 34 .....CG..T....AA.G..T........... CGCGTTGGTGATGGCGGCAACGGCACCGCCGATG 266595 31 81.2 35 .....-....ATA..A.G.............. GGACGCCTGCGCCCGTTGGGTGCGCGCCGCTGCGC 266661 31 90.6 34 .....-....A......G.............. TCGCCGATCGGCAAGGACTTCGACGCCCTCGCCG 266726 32 87.5 34 .....C....AT.....G.............. AGCCGACGAAGGGTCTCGTTGGTCAGGTCTAGGA 266792 32 81.2 35 .....C.T..A......GA.A........... ACGGTCGAGATGGCCAAGCGGGCGGGCCTGCTGAA 266859 32 87.5 33 .....C...TA......G.............. TGCAGTACGGTGCGGGCGACGCTGCGGCCGGAC 266924 32 93.8 35 .....C...........G.............. ACATAGCGGTCCACATCGGCCGCCGCCTAAGCCAG 266991 32 100.0 34 ................................ ACGGCAATGACCACTGCCATCAGCAGGCTCCCGT 267057 32 84.4 30 .....C...TA......G...C.......... ATGCGTCAGGGTGACCGGCACCTGATCGAG 267119 32 84.4 35 .CA.G.....C......G.............. AGGCGCATCGGTAGGTAGCGGGTGCCGCAGCGGCT G [267126] 267187 32 93.8 34 ..........A......G.............. AGCACCATAGCGTCGAACCACTCTTCCTGGGCAA 267253 32 100.0 33 ................................ TGTTGCAATCGGCGCAGACCATGACGCAATTGG 267318 32 87.5 35 .....C...TA......G.............. CTTGCCGGTCATCTGGTCCAGGAGTTCCAGGGTCG 267385 32 81.2 0 .....C...TA.....AG.............T | ========== ====== ====== ====== ================================ ====================================== ================== 55 32 93.1 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : TGACGGCTACCCGCCGTTTCTATGGAAATGACCGGCCATGCTGATGCTGATCACCTACGACGTAAACACCCAGGACGCGGCCGGCCGCCGCCGATTGCGCCGGGTTGCGAAGGCCTGCCGGGATTTCGGTCAGCGCGTTCAGTTTTCCGTATTCGAATGCGAGGTCGATCCGGCGCAATGGACCGCATTGCGTGCCCGGCTGCTCGGTGAAATCGACCAGAGCACAGACAGCCTGCGCTTCTACCATCTTGGCGCCAATGCTAGCCGTCGCATTGAACATGTCGGTGCCAAACCCGCATTGGACCTAGACGGAACGCTGGTGTTCTGAGCGTGCGCGAACCTGAAGCGGACAGGAAACTCCTGGGAGGTTCGCAGCGGAACGCTTTCAATGGGTTAGCTTCGATGGCATTGTGATTGACGCCCGACAGAACGGCGCGCGCGAACTGATTCGCGCTCGACCGGAGATTTTGGGTGCTTGGACAAGTGGATATTGACTGCCA # Right flank : TTTGCCCTGGTCGATGCCTATGCGGACGGTGGAGGGTCGCCCCCACGTGAAGGGCGACGGCGTCAAACGGCTATGGGTGGCAGCCTCAACTCTCGGTGGTTGCGCGCCCCCGCAACCACCATCAAGCCGCTGATTTCCAAAAAAATCAGCGGCTTTTTGCTGTCCGCATTCCGCCTGAAAAACCCCTCCGTGGCAGCGTCGTGGAAGCACCAGGGCGGAAACTCCCGGATAGTTTCGGCGGCCAGGATCGCGTATTTGTGATGGCTGAAACGTAGATGGTGCATGCCTTGACCCGGCCGCACACGGCTCGGAAACAGCTAATCACTGCTGAGGCCACTCCTCAGACGAATCCATCGGGCAACCGACTCCGAGGTCTGCTCAGTGATCTCGAACTGGACCGGATGGGGCCGGTCTTCTGCTGCACCACGGTCGCGCGAGAGCGCACCGAGCCGTTCAGGGCGACATCGCCGATCTTGAGACGGACGAGATCGCACCCACGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-107] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //