Array 1 2042377-2043898 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029695.1 Akkermansia muciniphila strain EB-AMDK-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2042377 31 100.0 34 ............................... CGCAACTTGCGAGGAACTTCTTGGCATGGTCATC 2042442 31 100.0 33 ............................... CGGGGAATCAAGGGTGCCGCATGCCGTACCGAT 2042506 31 100.0 33 ............................... TGTTTTCCGTGACTTATGGGGCGGGGTTGCCGT 2042570 31 100.0 33 ............................... TTGACGCCGAACATTTTACGATTGTGTCATACA 2042634 31 100.0 33 ............................... TAGTTATTGTTTTATTGTGCGGGGGGTTCCCCG 2042698 31 100.0 34 ............................... TGATACCGGTTGTGAAAGTTTCCGCTTTGTAATG 2042763 31 100.0 33 ............................... CGCTGGTGTGAGGTAGTAGCGGTGGACAAAAAA 2042827 31 100.0 34 ............................... CGCTGGTGTGAGGTAGTAGCGGTGGACAAAAAAC 2042892 31 100.0 35 ............................... ACTTCATGGAATTCAAGTGTTCCATCGTTGCAGAC 2042958 31 100.0 34 ............................... CTACGGCGTCGCGGTTGGACTCCTGGAGCAGATA 2043023 31 100.0 34 ............................... TGTTCAATTTCCCACGGCCATTTCTCAATATCCT 2043088 31 100.0 34 ............................... ACAATATCCAGCAGCTCCGGCCGGCCGGTCATCT 2043153 31 100.0 34 ............................... AGTTTAACTGATTTTATTATCTTGTCAAATACTT 2043218 31 100.0 34 ............................... CTTTGGATTCACGATTCCCCCTATCCCACGGAAT 2043283 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2043348 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2043413 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2043478 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2043543 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2043608 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2043673 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2043738 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2043803 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2043868 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2532593-2531885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029695.1 Akkermansia muciniphila strain EB-AMDK-5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2532592 33 90.9 34 A.T......A....................... ATCGTACATGGGCAAGCCATAATCGGAACAAAAA AT,G,G [2532581,2532584,2532587] 2532521 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2532453 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2532386 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2532320 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2532253 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2532186 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2532119 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2532053 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2531986 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2531963] 2531917 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 11 33 98.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : ATGGGGAGTGGATGATTTACGGCTGTTTGTACGCCTTGCGCGGCCGGGTCGCCAGGCGATTGCTCCGGGATATGGATTGGGAGAACATGGATGCCCTGGCTCCGGAGGACTGGACTATCGGACGGGCGGCATTGACCAGTTTGCCCGCCGCGCTGGCACGTATTGATGAACCATGGAGCCAGCGCACGCCGTGGAGTTCATGGACGGCCTGGTGCTGGTACAGCCTGACGGCCTCTCCGGAGCGCTACGCCTCCCGGTTTGCTGTCGTTACGACCGGCAATCCTCGACTGGATACCCAGCCGGCCAGCGATCGGGCCAGAGTGATGCACCTGCTGGCCGATGCCAGGGAGCGGATGATCCCGGAGGATGTCTCCAAAGAGGACGACGAGGCGGTGGACTGGGGAGACCTGCTGGCCGCCTGCAAGGGAGATGCAAAGGCGTTGCAATGAGGGGTGTTTAAGGTCGTTTTTCCACAATGCTTGATAAATTTTCTACAAAGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2565644-2563531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029695.1 Akkermansia muciniphila strain EB-AMDK-5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2565643 33 100.0 35 ................................. TGCCGGTGTGAGGTAGTAGCGGTGGACGAAAAAGG 2565575 33 100.0 35 ................................. ACCTGTAGGTAAAATAGACCAGACCGCCGTTACAC 2565507 33 100.0 34 ................................. ATGATTTAGTTTCCTTTCTGTTTTGGTTTATTGT 2565440 33 100.0 35 ................................. CATGACCGTTTCAACGGTTCCGGTGCGGGGTACCT 2565372 33 100.0 34 ................................. CGGTGCGGGGTACCTGCGTATAAGCAACCGGACG 2565305 33 100.0 34 ................................. CTATGGATTCCGGGGGTGCAATAGTTAATCCAGC 2565238 33 100.0 34 ................................. CGTAGAGAGTGCGAAAAGCCACTTACCCCCATGA 2565171 33 100.0 34 ................................. GTTGTCTTTCAGTTCAATTTGATTGTTCATTGTT 2565104 33 100.0 34 ................................. GATAGGAGAAAAGGCGGTTGCCCTGCCATGACAT 2565037 33 100.0 34 ................................. TATTGTTTAGCGTTATCGTTTTGTTGAATGGATA 2564970 33 100.0 34 ................................. CTCAATGTAAGCGAAAAGGCCCGCCCCCTCATAA 2564903 33 100.0 34 ................................. TCTTACCTTGTCAAATAATTTCTTAAGTTGTATG 2564836 33 100.0 34 ................................. AATGTCATCCGCTTTATCACACGGCAAACCCGCA 2564769 33 100.0 34 ................................. AGCTTAATGGCGGCCATGCGGACAAGAGCGATTT 2564702 33 100.0 34 ................................. CTTTGTCGCGCTGGGAGAAGCGCAGACGCGGCAA 2564635 33 100.0 34 ................................. TTCAGGTCAATCTGCTCCCATTTCAGCGTCGCCA 2564568 33 100.0 34 ................................. TCCCCAAGGGCCCCTTTCCTGGTGCGTTCTGGGC 2564501 33 100.0 34 ................................. TCCCTGGTCCGTATGACGGTTGCCTTCCCACTTG 2564434 33 100.0 35 ................................. GACGGCCCCCGTAGGATAAATGACGGTGCTATATG 2564366 33 100.0 34 ................................. AGCTTTAAGAATGTGTGTAGGCTTCAAGGCGGTC 2564299 33 100.0 34 ................................. GAGGGCGGGGGCAACGTCCCAGGAAAAAATATCA 2564232 33 100.0 33 ................................. TATAGGGTAGCGTAACTTTTCAGGGGGGCCGGG 2564166 33 100.0 34 ................................. TTTTAGTGGTTTTGTTGTCCGGGGTTGCCCCCGT 2564099 33 100.0 34 ................................. TAGTTTATTGTTGCGGGGGTTGCCCCCGTTGGAT 2564032 33 100.0 34 ................................. TAGCCTTATCCGGTGCCGTCTTAACCATACAATA 2563965 33 100.0 34 ................................. CCGGTGTAGGACAATTTCCCATGTGCTATGAGCC 2563898 33 100.0 34 ................................. TCCGCAAACAGTACGAGGGATAAGATTCCGGCGC 2563831 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2563764 33 100.0 34 ................................. TTCATATTGTGTTCCTTTCTTGTTGGTGGTTTTA 2563697 33 100.0 34 ................................. TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2563630 33 100.0 34 ................................. CTCCGGCAGTAACCAGTCCACACCAGAAAATCAG 2563563 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 32 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTTTAGTGGTTTTGTTGTCCGGGGGGGTTGCCCCGTCGCACTCCGCAATGATCTTTATCAATGAAGGGTGGAAAGGGGTGAATTTAGGGTGAATAGGGGTGAACGCTAGGAAAATCAAGGGGAGCAAGCGTTGAGTGATCAGAGAAAGACTGTGTAGAAAATATCGGTGTCAGAAGAGGAAATTATCAAGCAGTGTGGAAAATAATCATGGTAAGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGGAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACCCGTGAAAGAAGAAAGACGACATGCTGGGTGCGGGATGTGCTCGACAACGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAAAGGCCGCCAGGAAAAACCTGACGGCCTGAATTGTATTTGCCCATTGTTACAGGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //