Array 1 309839-308953 **** Predicted by CRISPRDetect 2.4 *** >NC_017445.1 Erwinia sp. Ejp617, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 309838 29 100.0 32 ............................. GGTGACCAGCGCTTCATTGTTCTGGCTTACAC 309777 29 100.0 32 ............................. CCGGAAATTTATTTGTGAGTCGGGGAATCTGG 309716 29 100.0 33 ............................. TGCGGCAGCAGGGCTTTCGTCATCATCTAAAAT 309654 29 100.0 32 ............................. ATGGTCAGTTTGCCGCCACGGTTGACCCACAT 309593 29 100.0 32 ............................. CGCTCAATGCTAAACGCAAACGCGACATCAAG 309532 29 100.0 32 ............................. CGCTCAATGCTAAACGCAAACGCGACATCAAG 309471 29 96.6 32 ............................T AAGCGCGGATGTATTGGGAGGGAACGACACGC 309410 29 100.0 32 ............................. TCGCCATTTAATCAACCCCTTAGCGTACTACG 309349 29 96.6 32 ..T.......................... CTACCCTGTTGGAGAGGCTGTTGATTTCCCCC A [309345] 309287 29 100.0 32 ............................. TCACTGGAAAAAGGGTCGTAGCAGTCAGTGCC 309226 29 100.0 32 ............................. GAATGCCTATGCAACAGTTCGCTATTGCTGGG 309165 29 100.0 32 ............................. AGACTGCGTGCGCCCTGATTTTGCCGAATTTA 309104 29 100.0 32 ............................. AGACAACGAATGACACTGCAGGAATACATCGC 309043 29 100.0 32 ............................. TATACGTTCCGGCGCAGTGCCTGCCGCTGCCC 308982 29 79.3 0 .....................T..GTGGT | G [308955] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCACTGATTGAAACGGTGCTTGCCGCCGGAGAGATATCCCCACCGCCATCCCCGCCAGATGCCCAGCCGGTTGCCATTCCTGAACCTCAGTCGCTTGGCGATGTGGGTCACCGGAGTTCGTAAAATGAGTATGCTGGTGGTGATTACTGAAAATGTTCCTCCCCGCCTGCGGGGACGTCTTGCCGTGTGGCTGCTGGAAGTGCGTGCGGGCGTGTATGTGGGTGATGTTTCGCGCCGCGTCAGGGAAATGATTTGGCAGCAGCTGGATCAATTATACGAGGAGGGCAATGTAGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGGGATAATCGACGCCTGCCGATGGACCTGGACGGACTGCGGCTGGTGTCATTTTATCCCGTTTAAGATATGAAAACGGTGCTTTTTCAGAGCAGATAATCTGGTAGATTTTAACGGGTGGAAAAAACCGTTACAATTTAAGTGGTTGGTTCTAGA # Right flank : CAAGTAATTCTGGCCACGGTTTTATGGTAAGAGCGGTATCTGCTCTCTGATTCTTCAGGTGTCAGACCGCCATTGTAATGATGTGGTCTGACGCTGTTGTAATAGCGCTGGATATAACACCTGATTTTCTCTGCGGCCTCGCCCTGATCCCCGTAACCATTTGCCGGTACCCACTCCGTTTTCAGGCTGCGGAAGAAGCGTTCCATTGGGCTATTATCCCAACAGTTCCCCCGCCGACTGACGCTTTGTTTCATCCTGTATCGCCAGATAAGCTGTTGATATTTCAGACCCGTGTACTGGCTTCCCTGATCGCTATGGAACATCACATTCTGCGGCTGGTCTCGCGTCTCATATGCCATTCGCAGCGCACCACTTATCAGTGCCGTATCGGCATTTGCTGACAGACTCCAGCCAATAACTCTGCGGGACAAAAAGATCCATGACGATCGCCAGGTAGCACCAGCGATTTCCAGCCCAGATATACGTAATATCTCCGCACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320645-319944 **** Predicted by CRISPRDetect 2.4 *** >NC_017445.1 Erwinia sp. Ejp617, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320644 29 100.0 32 ............................. TTAATTGCAGACGCGCAGCAGGCAGAGCGTGA 320583 29 100.0 32 ............................. TTATCGCAGTTGCTGATATCGAACGTGTCAGA 320522 29 100.0 32 ............................. CTGCTGCCGGGTCATTGCAATAATCTTTAGGA 320461 29 100.0 32 ............................. TTTTCAGAAATTCAGACATGTTGCATTTTTTC 320400 29 100.0 32 ............................. CTATGGAGTCTAACAATGAGCAAGCTGTATGA 320339 29 96.6 33 .............A............... ATTGATAAATATGATTTTCGGCTCTATGCCTAG 320277 29 100.0 32 ............................. CCCTTTCACCACGTCGAACACTTCCGGCTCAA 320216 29 100.0 32 ............................. AATCTCGCGAAAGAACTGGGGTGTGTTGTAGT 320155 29 100.0 32 ............................. GGCATCGGCCTGATTGTCGGTGAAACAGGTTC 320094 29 96.6 32 ............C................ CGCCACACGAGATTGAACACGAACATCAAGAT 320033 29 100.0 32 ............................. CCCCTTTTTCATAAACTTCATGTACCGTCATA 319972 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCAAGTTCCTTCAACCCTTACGGGCGCCCGGTCAGTTGCTTAATGGTAACGATAATCAGCAAACTGACGTGCAGTATCTGCAACGTCAGCAGGATTGCTCCCAGCGTTATCACCTGCATCTCCTTGATAAAGGAGCGTGCGCGCAGCCGGTGAATGCTTTTGGGCTACCCTTCACGGCGCGTACCGGTTGTTAGCAGGTACAGGCAGCACCGTTGCGCAAAGCGGCCACCAACCGCTGCGGAACAGGAATCAACCCGGTCTTACAAACCGGTTTTTTTTCGTCTTCATGCTGCCATTTCCGCTATATTGAAGATGTTCACTCAGCCGTTTGCCCCGCATATGTGGCCGTGTATCAAGCCGATTTTTCCCCGTTTTAAGTCGCGGATCCGTGCGCGCTTTAGAGTGGGAAAAGTTGGTAGAAATATGGAGTGGTAAAAAACTTTCTAAGATCAGTGAGATAGTTTTAGA # Right flank : CTGATACATTTATCCCTACCGTTCTATGATTAATGCGAATCGCACGATCCGTGCTAATAGCATGATTAAGGAGGAGACCATGCTAAGTTTTACCGCCAATCAGGAGAAAACGCAGTTTGGGGATTTGATGACCAAAGCGCAGCGTGAGCCGGTTAGCATCACCCGTAATGGCCGTCCTGCGGTTGTTGTCGTTCCTGCCGAAGATTACGCGGCGCTTGAACAGCTGAAGCTGGAGGCTTTACGAACCAGGCTGACCTGCTCGATAGCTCAGATGGAAGCCGGACAGGTTCACGACGGTGACGCGGTGTTCGACGAGTTGATGAAGGATCTGTAATGGGAAAATTCACACTCACGGATGATGCTAAAGAGGATATGAAGGAAATAAGGGCATATTCTGTTCAGCAATGGAATAAGGAGGTGGCGAAAGTCTACCTGGCAGGGATGCGCCTTGCCATGCAGATGCTGGCGAATCATCCTGATATTGGTGATGACGTCAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //