Array 1 43892-42148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000011.1 Listeria booriae strain FSL L7-0273 NODE_11_length_113048_cov_61.300227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43891 30 100.0 36 .............................. AACAATTAGCTTCGGCGGCATCATGACCGAAGGCGA 43825 30 100.0 35 .............................. CTGTTTTTGCATAACCTTGATTACCATTTACTAGA 43760 30 100.0 35 .............................. ATAAACATGTCGATAGCCATAAGTTCTTTTTCATA 43695 30 100.0 35 .............................. TTGGTTTCATCACTCCTCATAATCAAAATTTGAAC 43630 30 100.0 37 .............................. TCAGCAACATATTCTAATTCAATTAAATTACCAGCTT 43563 30 100.0 36 .............................. ATTTTTTGCGTCCCAAGCTGGGTGGTGCGTCGTATA 43497 30 100.0 36 .............................. AAATGTATCCCACTCGTTTTGGTATTCTCGCGGCTC 43431 30 100.0 34 .............................. ATCGTAGTGGTCGTATTCATCATATAATTGCTCA 43367 30 100.0 36 .............................. ACGGATGCGGAAGGATACAAAACATCAGCAGAATTG 43301 30 100.0 36 .............................. ATCAGTAGAATCTTTTGACGATATTAAAAAGTCCCA 43235 30 100.0 37 .............................. GCTGTTTACTAGTTTTGTATATTTGCGACCTGTAAGG 43168 30 100.0 36 .............................. AGCATAAACAGCGTAATATCAGCCTGCGGGTTGGTA 43102 30 100.0 35 .............................. CTTCTTGATTCTAAACCAGAGTCAATAAAAAAAGA 43037 30 100.0 37 .............................. TTCATTTAAGAACTTACGTTCGGTTTTGAGGTTGTAA 42970 30 100.0 35 .............................. ATCGGCGTGTACCACTTAATTTTATTTGCGGTGAT 42905 30 100.0 38 .............................. ACTTGTGGAGCTGTCGGTGGGAATACAGATGTGATGCT 42837 30 100.0 38 .............................. AACTGAGACGCTAGACACGACCTCTCCCGGCGGTCGAG 42769 30 100.0 36 .............................. CCTACACCATACCTATATTGAATGTCCGCAGTAATG 42703 30 100.0 35 .............................. GTTGCAGAGAGCACATTTGTACTGAAAGCTTTAAA 42638 30 100.0 36 .............................. AATAAATTGGTTGCGGCTTTCTTTATATGTTTTTTC 42572 30 100.0 37 .............................. TACCTTGGAATCCAAGTAAAATCGGCTCCAACGCTCG 42505 30 100.0 35 .............................. ATCAGAGCGCCAGAACATCGTGTCCGCCATTTGCT 42440 30 100.0 38 .............................. ACTTGAAATGGCGGGTTTATTTGAACAATTGAAGCATC 42372 30 100.0 37 .............................. AAAAAGAGGCGCGAACACAAGGTTTTCAAATGATTGC 42305 30 96.7 35 .............C................ AGTTTAAATGCTTGGGCAAATACGTTTCGTTTGAT 42240 30 93.3 34 .............C..............G. TTATCTGCACAGCACGCAAGATTGGGAACTTACG 42176 29 73.3 0 ............T...-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGCCTTGTTCAGAAAACAACATTTGGCGCGAACCTACAAGTCATAGCGAATTTTTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAACAAGATAATTTCTACAGACAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTGCTAAAGGGGGTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGGGCAATGATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAATAAGAGGGTACTATCCATTAATACTGAATAATGGATAGTACCCCTCTTATCTATTCGCCTCTATGTTGAAAATTTTTAGCATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTAGTATCAAGCACATTACCATTGATATCGTAAGCAGTGATATGCGCGCTATCCGTCGTATTAAGAATGGCCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTCACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTCGCATAATACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 48091-47139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000011.1 Listeria booriae strain FSL L7-0273 NODE_11_length_113048_cov_61.300227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48090 30 100.0 35 .............................. AGAAGAATGGCAAGAAAACACAAGCTGGCAACTAA 48025 30 100.0 33 .............................. CGGATGCTAAAAGCGTTACATATTATATACTCC 47962 30 100.0 36 .............................. TAGTAGGTGGTCATAGTCCTTTGATGTGGCTTCTGT 47896 30 100.0 36 .............................. CATGAAGACAATAAATGCAACATATGCAATCAGGAA 47830 30 100.0 36 .............................. TCGGCAATCGGCTGTAGATGCTCACAAATGAGATCA 47764 30 100.0 36 .............................. ACGACCGTTCGCTATAAAAAAATAACGCTCGGTAAT 47698 30 100.0 34 .............................. TTGTACATGTTATCTTCAAAAACTACGATATTTC 47634 30 100.0 37 .............................. AGTATTGCTACTGTTGCGCTCGACGGCTCCCAATTAG 47567 30 100.0 36 .............................. TAGTGGTAACGTCATGATATTCATCCGCCTTTCTTT 47501 30 100.0 37 .............................. GCAGATACGAAAGAACAACAACGTTATTGGAGAAAGA 47434 30 100.0 37 .............................. TACTCCGGCATTTTTTTTGTGGTCAAACTTGCATTGG 47367 30 96.7 36 ...............A.............. AGCGATAACTTCATTTGCATAAAGTTTTGTAATAGC 47301 30 96.7 37 ...............A.............. AGTTACCCAATTTACAAGTTCATCATTTAAAACTTTT 47234 30 96.7 36 ...............A.............. TTTTTTGTATGCTCCAGTTTGGCTGTTCATTTTCAT 47168 30 80.0 0 ...............A.A..C...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.0 36 GTTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : TGACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATTGTGCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGGCATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGTGACTGAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGATAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTAGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATTGAGATTCTTTAACAAATACAACGGTATAGACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAAACCACTCGATACCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2783-1306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000006.1 Listeria booriae strain FSL L7-0273 NODE_6_length_193978_cov_72.996710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2782 30 100.0 35 .............................. CGATGTGCCCGCCGTCTTGCAAGTTCAACCCGTGC 2717 30 100.0 36 .............................. GACAACTATCGTAGAAGCAGGAAATCATGTATTAGT 2651 30 100.0 34 .............................. CAAGTACGCCTTTGCTTCTTCTATTTGCTCCTCA 2587 30 100.0 37 .............................. GAGTCTTTTTTCAACGTTTCAATATCTGAATCTCGTT 2520 30 100.0 35 .............................. AGGAACCATGCTTCCGTTTTGGTAAAGCTTGTAGC 2455 30 100.0 37 .............................. ATACTAACAGGGGGGCTACTAGCGCAGAAAATGCATC 2388 30 100.0 34 .............................. ACATTTGACGAATTTCAATTATAGAAAATTCTGG 2324 30 100.0 37 .............................. ACGCTTTGCGCCTGATGCGGACAGCTTGGCGTGGATT 2257 30 100.0 36 .............................. GCTGTTAGTTTTAAGCAAGGGTGGATGTCTTATGAG 2191 30 100.0 37 .............................. TTGATTTCGGTGAGATTGAGGAAGACGGTGATGAGCT 2124 30 100.0 37 .............................. ACGCGTTCCTCAAGCGTAATTAGCTCCTCGAAAACGG 2057 30 100.0 35 .............................. TTGCATTTTTAACATAGTTTGTAGCCTGCTTTAAA 1992 30 100.0 37 .............................. TTTCTTTCTTGGTGTTGGAATCAATGATGATGACGCC 1925 30 100.0 34 .............................. CACTTCATGCCATTTATTCGTGCGCCTTTATTCA 1861 30 100.0 35 .............................. TCTGTATCGTCTGCTATAGTTGCAACAGCTTCTTT 1796 30 100.0 36 .............................. GACGAAGATAATGGCGTAACTATGTATGATGAGGGA 1730 30 100.0 37 .............................. TGGAATACCAGACAGCGAAATAAGGCGCCTGCCTCAC 1663 30 100.0 37 .............................. TTACAATTAAATGAAACGCTCCATTTGAGCAGGTACG 1596 30 100.0 35 .............................. ATGTTTTGTCGAGCTGCTTTTTTCTTCTCGATTTC 1531 30 100.0 35 .............................. ACAATTTTTCTTCATCGATTTGAATCCCTATCATT 1466 30 100.0 36 .............................. ATTACTTTTAATAGCTCACTTAGTTTTATCTGATCC 1400 30 96.7 36 .................A............ AATAACAACCGAATTTTTGAGGACTAAACCGTGATA 1334 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAGATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGTTGGAGTCTATTTTCGAAGTTCGGGTTGTAAGGTTAGAAAGTGGGAATTTAGGATTGGGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTAGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTAAGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 289004-287070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000003.1 Listeria booriae strain FSL L7-0273 NODE_3_length_438211_cov_73.301227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 289003 30 100.0 34 .............................. CCGTTTATTCTTGCCGCTGTGTTAAGACCCGAGT 288939 30 100.0 34 .............................. AATTGTTAATGAAGAGGCAACGATTAGCACGAGT 288875 30 100.0 34 .............................. CCGATTGTCTCAGCTAGTCTTTGCGTCACTTTTG 288811 30 100.0 35 .............................. ATCTTAACATTATTTTACTACATATCAGGGTTAGG 288746 30 100.0 34 .............................. GTACCATAGCAGCCGCGGCATTTGCAGCTCTTTC 288682 30 100.0 37 .............................. GCCGTTTATTGATATTTTTATGAACGCGTGGACTGGT 288615 30 100.0 36 .............................. TTTTTGTGTCAATATCACTAACCGCAAACGGATAGC 288549 30 100.0 37 .............................. TAAGCTTCCAGCTCTTCCTCTGACTTAATCGGTGTAC 288482 30 100.0 35 .............................. CTGCGATCGAATAAGTCTTGCAAAATAGTTGTTCT 288417 30 100.0 37 .............................. TTTTGACCAGGAATTTGGTAAGTACGAGAACGACGAA 288350 30 100.0 33 .............................. ACCACACGCGCTTTTTAACCAGCTAAATAGTTC 288287 30 96.7 34 .G............................ GCAAGTAGCATGTGAACCTTGAGACGTTCGCGGC 288223 30 100.0 37 .............................. AGTTCTTTATACACTTTGCTCATTACAAGAAACCTCG 288156 30 100.0 37 .............................. AGAGCCCACCTACAAAGACAACAGCGCCCGATTTAAC 288089 30 100.0 36 .............................. GTAGCGTATTTGGTGCTGGAGTTCCTGTTAGGCCAA 288023 30 100.0 35 .............................. TATGAAGCGCTAGAGTTTTTAGAAAATGAAGGATT 287958 30 100.0 37 .............................. CACCGCGGTAACGCCATTCCAAATACCTTTTGCATCA 287891 30 100.0 37 .............................. ATAACCTGATTAAGTTTAAATTGCTCTGTTTTTGTTT 287824 30 100.0 35 .............................. TCCGAATCACCTTCCCCCAACGTCGGTTCTAAATC 287759 30 100.0 36 .............................. ATTCAGGAACTAAGGCAATTAATTGAGGAAGAAGAA 287693 30 100.0 37 .............................. CGGGAAAAATGGGAGTAAGACAGCGAAAGAGTTTTTT 287626 30 100.0 37 .............................. CTCTTAATACAAGCACTGATTATTTACTTGGTAAAAC 287559 30 100.0 35 .............................. AACAAACTTGAAGCTGGGGAGGTATGCGAGGTAAC 287494 30 100.0 36 .............................. TAACTTCTGCAGCACTGGCGAATATTCCAAAGTCCT 287428 30 100.0 35 .............................. TTATAATAAACTTCGCCTCTGAATATTTCATTTGA 287363 30 96.7 36 ..........G................... GCAGCAACCTCGATTAAAAGATTGTGTATGACCTAA 287297 30 96.7 37 .................T............ ACGGCAAACATGAAGCAATTGCAAGATATGACGATGA 287230 30 100.0 35 .............................. TTAGGCGATGAAGCCCGCTTAAAAATGATTACAGC 287165 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 287099 30 73.3 0 A......C.C.T...C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 98.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTAACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTTGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTGGCAGGCAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCTATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTTAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTACCCGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 417260-417493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000003.1 Listeria booriae strain FSL L7-0273 NODE_3_length_438211_cov_73.301227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 417260 35 100.0 32 ................................... CTGAGAGCATTATCAGAGAAGGTAAAGCAACT 417327 35 100.0 31 ................................... CTTTTAGGTGGTTCTTATAAAGCATTGACAA 417393 35 100.0 31 ................................... CAGAAAAAAGAAAAAGAATACTACAGCCTCA 417459 35 91.4 0 ...........................T.T..T.. | ========== ====== ====== ====== =================================== ================================ ================== 4 35 97.8 32 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Left flank : ACTGTACAGATATCCCCATATTGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGTGAGTCTTCCAAGTAAAAAACATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGTACTCCTAACTGCTTTCTAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCATCATTGACTACCGATTGGATGAGCATCACTTTAAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCGATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATTGATTCGCCATACAT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 420909-421131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000003.1 Listeria booriae strain FSL L7-0273 NODE_3_length_438211_cov_73.301227, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 420909 26 100.0 40 .......................... ACTCTAAATCTGAAAGATAGAAGATACGATGATGCCGTAG 420975 26 100.0 40 .......................... ACTCTAAATCTGTATAAAATCGATTGGAAAAACGGCGATT 421041 26 100.0 39 .......................... ACTCTAAATCTCTAAAACTGGTGAAGTATTAACAAGCGC 421106 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 4 26 100.0 40 GTTTTAGTCCTCTTTTGTTTTGAGGT # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TTGTAATACATATCTATTTTACTTTCAACAGTTTAGCTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAATAATTTCCCGTACTAAATCAACAAAAAAATACCCTAAACCGCATCTTACACAGCGATCTACAGTGTTTCCCCTTCTTTCTAAGTGGAGAGACGGGGATTATGATAGTTGGATGAAATGTACTCGTGGTGCTGGTTTCAACGCTTATAATGTTGGCTATGTGGCAATTTTGTGGCAAATAATTTTAAGAAGATGGTGAGAGATTTTGTTCGTCATCTTCTTTGTTGTGTGCTGACTTGTTCTCTTCACAGCCATTGTAATTGGAAATATTATTCCTCACTTATACACAGCAGAGGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCGATTCACAGAATATCCTGACGATGCTCCAGGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCTATTTTTTATGACT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 421515-421814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWS010000003.1 Listeria booriae strain FSL L7-0273 NODE_3_length_438211_cov_73.301227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 421515 36 100.0 30 .................................... GATTCACAGAATATCCTGACGATGCTCCAG 421581 36 100.0 30 .................................... TATTTTTTATGACTCCATTTTTGACTCCCA 421647 36 100.0 30 .................................... TCCAGAAAACGAAGATTGAGGGTGAGCTAC 421713 36 97.2 30 .............................T...... TTAAATAGACGGAGAACAAGCTTTCTGTAT 421779 36 75.0 0 A................C...T.A....C.ACT..T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 94.4 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : TAAAATCGATTGGAAAAACGGCGATTGTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATCTCTAAAACTGGTGAAGTATTAACAAGCGCGTTTTAGTCCTCTTTTGTTTTGAGGTTGTAATACATATCTATTTTACTTTCAACAGTTTAGCTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAATAATTTCCCGTACTAAATCAACAAAAAAATACCCTAAACCGCATCTTACACAGCGATCTACAGTGTTTCCCCTTCTTTCTAAGTGGAGAGACGGGGATTATGATAGTTGGATGAAATGTACTCGTGGTGCTGGTTTCAACGCTTATAATGTTGGCTATGTGGCAATTTTGTGGCAAATAATTTTAAGAAGATGGTGAGAGATTTTGTTCGTCATCTTCTTTGTTGTGTGCTGACTTGTTCTCTTCACAGCCATTGTAATTGGAAATATTATTCCTCACTTATACACAGCAGAG # Right flank : TCATCGTTATCTCCATATAATTTATTCAAAAATGTTTTCAAATCCTCAGCAAGCAAAAACATATTATCCATTTCCGAATCAGATTCCATATCGTGTCGCCAAAAATAAACTTTTTCTTTATACTCGCTCTTCTCTGTTCCTATGCAGATTTCGTTTCCAGCAGGGTCGTCAGCAATAGAAATAAAACCATCTGGTATTTCACCATCCAGTATTTCAAATGTCTCACCTAAATCCCCTGATTCTTCTCCAATGCCATAAAATTTATTAACTAAGCTAACGCCTTCATCATCTGATATTATAAAATTAGATTTTTCAGGGTACCCACCATTAAATTCAAGCAAGAAAGTCTTATATTCTTGCGTTAGGTTTAAACCATGCTTAGATTCAAATACTTCAATATCCTTACTAGTTATTTTTTTATTTTCACTGTTCATCTTAAACATTATTTCACGCTCCTATTTACTTTTCCATTTACAGCAGATTGCCCGCCAATATGTCTA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //