Array 1 470224-471166 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVG01000002.1 Salmonella enterica strain SEH-2 NODE_2_length_730428_cov_29.1853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470224 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 470285 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 470346 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 470407 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 470468 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 470529 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 470590 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 470651 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 470712 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 470773 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 470834 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 470895 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 470956 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 471017 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 471078 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 471139 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487298-489140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVG01000002.1 Salmonella enterica strain SEH-2 NODE_2_length_730428_cov_29.1853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 487298 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 487359 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 487420 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 487481 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 487542 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 487603 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 487664 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 487726 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 487787 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 487848 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 487909 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 487970 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 488031 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 488092 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 488153 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 488214 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 488275 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 488336 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 488397 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 488459 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 488520 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [488562] 488562 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 488623 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 488684 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 488745 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 488806 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 488867 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 488928 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 488989 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 489050 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 489111 29 96.6 0 A............................ | A [489137] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //