Array 1 367390-367692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMG010000002.1 Bradyrhizobium sp. U87765 SZCCT0131 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 367390 32 100.0 36 ................................ GCGCAAGGCGCAGCGCCGGTCATCGCGCAGCAGGCC 367458 32 100.0 36 ................................ ATGTTGAAGTGCTCGCCTGTCGCAAACATGATCCGT 367526 32 100.0 35 ................................ CCCCAAAACAGAAAGTACCCGGCGCGACGATCAAG 367593 32 100.0 34 ................................ GTATTCACGCCAGTGCCAAAGTAGCTCAGCGGAA 367659 32 96.9 0 .............................T.. | GC [367687] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Left flank : GGTTCTGGTCCGACCAGGGACCGGCGAAGCTGCAGATGGTCGGCCTCGCCCACGGCGCGACACGCCAGGTGATCAGCGGTGCGGCGGAGGACGGCGCATTCTCGATCTACCACCTGCGCGATGACGAACTGCTGGCGATCGATTCCATCAACCGCCCCGCCGACCATATGCTCGGCCGCCGCATGCTGGCGTCGGGCTTCCATCCCGGCGCCGCGCTGATCGCCGAAGGCCCGGCCGCGCTGAAAGCCGCGTTCGCGGAGTTCGGCAAGGCCGTGCCGAGCGCGCGCTAGGATCTTTCCGAGCCGTCCGCCCTCGGTTGTGGCGCGAACCTGAAGCATGCCGGGATTTCCCGGCACCTTCGCGCTCGATCTAACACCCTGAAACATAACAGTATTCACGACCAGCCCCGCGACCTCGGCCAACCTGCAGCGATTTTTCACGACAGGTTCGCGCAGACGCCGCCTTTTCGCCAGCAAGCCGAACAGGTTAAAGGCTGAGCA # Right flank : CGTCGATCGCGCAGTCGGGCCCCATACCCCTGCCCACCAGACCCGCACAGAATACCATCATCGGAGTTGACCACCCTTACCACGACAGAAGACTTGACGAGGCAGCCTCCAGTTTCCACACTTGGAGAATTCGATTTTTTGTTCTTTCGAAGCTCCGCCATTTTCTGCTCCGGCTTCATTCATCCGTCGATTGTCCTCCCTCCGGCAGCGCCATGCACTACGCGCATTCGACCAAACGCGCTGATCGCTCCGACTGGCAGCGGCTTCTCGATCATCTTAACGCAGTCGCACGCCTCGCTGCGGAACTGGGCAACAAGTTCGGCGCAGGCAGGGCTGCAGCGCTGGCGGGGCTTCTCCATGATCTCGGCAAGTATGCGCAAGCCTTCCAGATCTACATTGGAGGCCACGGACCGAGCGTCGATCATGCCACCGCCGGTGCCCAGCAAGTGCTGAAACTGCCGATCGAAGGGCGCGACAGGGCGATCGCCGATCTGCTGACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 375862-377368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMG010000002.1 Bradyrhizobium sp. U87765 SZCCT0131 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 375862 32 100.0 33 ................................ TGCGATCTGGTCGAACACTAGAAGACGGGGGAG 375927 32 100.0 35 ................................ ACCTGAAGATTGCTGAGACCAGCAAGCATCAGATT 375994 32 100.0 37 ................................ CGGAAGCATATAGCCTTCATCGATAAAGACGCCGATG 376063 32 100.0 36 ................................ GCCACCACGCTGGCTACCGTGAACGCGTCGCCAGGA 376131 32 100.0 34 ................................ GCAGCGCGGCTTCTTCGGCGGCGCGGTCCTGGCC 376197 32 100.0 35 ................................ CTCCAGCGCCATCCGGTCTCAACGGCCTTCTGAGC 376264 32 100.0 33 ................................ TACACGTGGCGGGAACTGCGCCGCGGAAATCGA 376329 32 100.0 36 ................................ ATCGATGGCGATCTTGGGCGAGTTGAAAGCAATCGC 376397 32 100.0 34 ................................ AGAAGCTGCTGGCGATGGGGGTGGACGGCGCGGG 376463 32 100.0 35 ................................ GATAGATTCTGCCGGAGTGAAGACCCCATCCGATT 376530 32 100.0 36 ................................ AGAATCTGCAGCCGTATCTCAATCAACAGGGCGCGG 376598 32 100.0 36 ................................ GGCGCGATTGATCCACGCGCTCTTGCGCACGAGGAT 376666 32 96.9 37 ......................A......... CTTCTGCCAAGCTCGCAGCCATTCGCGAGCGAGGAAC 376735 32 100.0 34 ................................ CACGGAGACGTGCAATATGACCTGAAGCCAAGCC 376801 32 100.0 35 ................................ CGCTATTTGATCGCCACGTCCTCGTTCACGGTGAC 376868 32 100.0 34 ................................ AGACCCGGTCTCACCGGTCCCCGCAAAGTGTCGC 376934 32 96.9 35 ......C......................... TCCGCCATCAACGCCTCAACGTCCTTGCCTCCACT C [376946] 377002 32 100.0 34 ................................ TTCTGGTTCGTCGATGCCAGCCTGTCGGCTCCAG 377068 32 100.0 35 ................................ CAGATTTCGGGTTCGGCGACCGATCAGGGCGTGTG 377135 32 100.0 35 ................................ GGCTCGCAGATCGCGATGAGATCGCGCAGCCCCTC 377202 32 100.0 35 ................................ AAACCATCGTTGTTTCCTATTTCGGGGCGACTGCT 377269 32 93.8 36 ............................C.G. CAGGTCACTGTGCCCGGGCTCTGTCGGGTGACGTTC 377337 32 87.5 0 ................G.......T.GA.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.9 35 GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Left flank : TTCTGGAAATAGCGAACTCATCATGCTCGTCCTTGTGACCTATGACGTGCGTACGAGCGAGCCGGGCGGAGAGGCGCGCCTGCGGCGCGTCGCCAGAGCCTGCCGTGACTATGGCCAGCGGGTCCAGTTTTCAGTTTTCGAGATCGAGGTCGATCCGGCACAATGGGCCAGGCTGAAGGCCCGCCTTGAGGGCTTGATCAAACCCGAGCATGACAGCCTGCGTTACTATTATCTGGGTGCCAACTGGCAAAGGCGCGTGGAGCATGTGGGCGCCAAGCCCGCAGCCAATCTCGGCGGCCCCTTGATCGTCTAACAACCCCGGCGCGAACCGCAAGCGCACCCGAATCTTCCGGGATGTTCGCGCTCTCCGTAAGACGCTGATGATAAAATAGAATCCGGCGACATATCACTCACAGCACAGACGCAAAGACGATCAGCGCGACCACTTCGCGCAACGGACATAATTTCCCATGACAACAGAATAGGTTAGAGCAGGAGCG # Right flank : CATCGCGCAGACGGCGTGAACGTATGTCGCCTCCAGGCACCTGGCATTGCGTATGTGCTGCGCAGCACCACGAATATCCCCCGCTTTGAACGATTCCAGCGGCAAGGCCACCAGAAGGGATTATAGCCGCCAAGCGGATATGCCACACACACCGTCTCCTCCACCGGTCCGACGCACCCCGCGGTTCACCCGGTGCGGGCGCGACCGACGGTGAGACGATGACCGGACCGACCCTGCGCCGCTGGCTGTGGGTGCACAAGTGGACCAGCCTGATCTGCACGCTGTTCCTGCTGCTGATCTGCATCAGCGGCCTGCCGCTGGTGTTCCGCGACGAGATCGGCGACCAGCAGGATGACGGCCTGCCCTATGCCAGCGTCGGACTGGATGCCCGGAGCGTAAACCTCGACGAGGTCGTCGCGACCAGCCGCAAGATGTATCCCGGTGAAACCATCGTCTCGGCGTTCGTCGACGACGACGAGCCCAGGATCATGGTGTTCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //