Array 1 14109-14472 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPV01000015.1 Tindallia californiensis strain APO, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14109 32 100.0 34 ................................ TACAACGTGGGCAGCCTGGAAATGATAAGCGATC 14175 32 100.0 33 ................................ CTTTATAGCTTTTCAATTCAACTAAAAACAACT 14240 32 100.0 35 ................................ TCCTGCTAGATACTCGCCCAGTGCACTAAAGAAAG 14307 32 100.0 36 ................................ TCGACTATCCCTATTTAACCATTGAGAAATTTTCCG 14375 32 96.9 34 ..........G..................... TGGTTCGACACTCAACGATGCGGTGTATAAGATA 14441 32 96.9 0 ......................A......... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 35 GTCGCTCCCCTTGCGGGAGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CAACCTGCAAGTACATTAAGGAGAAACACATGCTTCACACAGAGAGAGGAAACATGCGGAAACGCAACTGGACAGGATAGCAAAAGTAGCAAAGGAAAATCCTAAAGAAAAATTCACGTCATTAATACACCTGATCAACGAGGAAAACCTGATCAAATGCCACAAAAACATGAGCACCGGAAAAGCATCCGGAGTAGACGAAGTGGCGAAAGAACAATGCAGCGAACAACTGGTGGAAAATGTTAAAGAACTACACACACGCATGAGAGGACGAGTTGCCCCCGCCCCCACTGACAGCATCCCCACTGACAGCAAATAGCATTGTTCGTATCCTTAAGCAGTAAGGAAGGCTATTGTGTTTTCTCTTGCGAAAGGGTTTCCGTTAAAGAACAAAGAGGATGAAGCAGCTGATAAAAGCATGATCATGGCAGGAATCGCGTTAACCATTATATTGGCTGGCCTAATCGGGCCATTGATGTATGCTTAGACGTTTCTAGTGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8732-7574 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPV01000007.1 Tindallia californiensis strain APO, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8731 30 100.0 38 .............................. TCAAGCACCGTCTCCCCTTCATTTGAGTATGTTTTTGT 8663 30 100.0 38 .............................. AAAGTCTTCCACGGCTGACTGTCCCTTAGTGGCGTTTT 8595 30 100.0 38 .............................. CCCTCTGGCTTCGCAAAACCTGCGATGTCATAGTAAGT 8527 30 100.0 36 .............................. ACTGCAAAATCATCATAACCACCATAAAAGGTACAA 8461 30 100.0 37 .............................. ATGAAATGCTAAAAGCATACCCAAATAGCAAAGATGC 8394 30 100.0 37 .............................. CGGGGCGAAGGCAAGGAAGCGAAAAAGGGAAGAACAG 8327 30 100.0 35 .............................. ACTGGTATTCCATCAATAGTGGGGGGTATAGATAC 8262 30 100.0 35 .............................. ATTTCTTGTAAAGCTAAATAATAATCATCGTTCGT 8197 30 100.0 35 .............................. AAGGCACATGGGTAGAAGATTACAGAGATGAAATT 8132 30 100.0 35 .............................. TCTGCTGTTTTGCTTTACTATGGTTATATGCTGGT 8067 30 100.0 36 .............................. ACATAATGGTTTTGTTCAGTAAATCATCACGACCTG 8001 30 100.0 36 .............................. TCAATATTCTGGAGAACCTATATAAAAATCATTTTT 7935 30 96.7 38 ...G.......................... TGCGTCACGAAAACAATGCACCTTCTACAGCTCCGCCA 7867 30 96.7 37 ...G.......................... TATGCAGAATCAAGAGTAACGGTGTCAGAGTAAAGCA 7800 30 96.7 36 ...G.......................... CAGAATCTGAATCACCGGAACAACGGATGGAGATAT 7734 30 96.7 35 ...G.......................... CCATGCTCGCCATCTCCTTCCTCATGCTTCTCAAG 7669 30 96.7 36 ...G.......................... AAATAAAAGCCTCCAATGAAGAAGAAGCTATTTCAA 7603 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.9 36 GTCTCAAGTCTTCCTATAAGGAATTGAAAC # Left flank : GAACTCATTTATTATACCTATTAGCAATCTGAAGTTAGATATAGTGAGGTGAATAGAAGCTGTTTGTAATACTGGTGTATGATATTAACGTTAAAAGAGTAGCAAAAGTGTTAAAAAAATGTCGGGAATATCTGTACTGGGTTCAAAACTCAGTATTTGAAGGAGAAATTTCAGAAGTCAACTACAAAAAACTAAAGAAGGAACTAGATCGAATCATAAATACGGAAGAAGATTCAGTTATCGTATACACTTTTCGATCAACCCGGTATTCAAAAAGAGAAACCATGGGAATTAAAAAAGGTGGCGACGATAACATGATTTAATCATTGATATTCGTCGTCGACCACCAGTGATGCAAAAAACACGGGAGATCGACGACAAACAACAAAACCTTACAAGGCTTGTAATTGGATGGTTTCACTAAAATTAGATAATTAAGAGTAGAATAGCACAAAGAATTGTGTTACACTTAATCTAGATTTTCCAATGCCTTTTGCGGT # Right flank : TATTTATCAAATAAAAAAGCACCCGCATCGTCTTTCTGGAAATACCTGTTTCCCTGTTAATATCTCTCTGTGATTTCCCTTCTCTAAAATGTTTTAATATGATTTCTTGTTTTTGCACTAAACGGATCATCCCCTTAGCCCCCTATGAAATGTCATAGGGTTAATTGTACTTCTTCTGGGGGATTTTTCAACTAATATGGTGGGGTATTTTTAGATTATCATAAACAGACGAATACACAGTTTGTAAAAAGAATGGAATCGCAGATTAGGAGAAAAGGGGAGCGTTTTATTTTACTATCTTATGAAGAACAAGAATGAAGAAAGGTCTCACGAAAAGGATCTGGAAAGCATCATGAAGATAGAAGGGACCTTTATTGTAAAAAGATAATTTACTAGGGAACCACTTAAAACATAGGTGAAACAAGCGGAAAATGGAATAGGATATACTGATGGGAGGAGACGGATCAAGGATATATCAAAGAGCTTGGCCAAAGGCCTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAAGTCTTCCTATAAGGAATTGAAAC # Alternate repeat : GTCGCAAGTCTTCCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 24379-24214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPV01000007.1 Tindallia californiensis strain APO, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 24378 30 100.0 37 .............................. TTTCCTCTACGGCTGATTTGTAACAATCTTGCTTATC 24311 30 100.0 38 .............................. CAAATATGACTAGCTAAAACCTTGCCATCATCAGCCAT 24243 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GCCGCAAGCCTTCCTATAAGGAATTGAAAC # Left flank : TTGGGATCCTTCAGAGGAAGATCAAAAATACTTACCAGAAGCCTTTATTCAATTGCAAAAAAGATTCCAGATCAACTGTGCCAAAGACCTATACGATTGTTATCAGGACTGGAATTACATGAAAAACAGGAGCTATGAAGACCGCAAAGCTTTTATGGTTCTATTTCATTATTACGTTATTGGTGTAAGCCTAAAAGACGCCTTACAGCATGTGCCTAGAGAAGATTTCTTGCAAGGCAAAACACCAATACTCTTTTCGGAAGATGGATATCACCAGGAAACTGGATTGACCTCACATTTCGAAGAAGATTACAATAAGTTTTTGTAAAATACTTTTGTCGTCGACCACCAGTGATGCAAAAAACACGGGAGATCGACGACAAATAACAAAACCATATAACGCTTGTGCTTAGGTGGTTTCACTGAAATTGAGTAAGGAAGAGTAGAAAAACTCAAATAATTGTGTTACACTTAATCTAGATTTATCAACGTCTTTTGCG # Right flank : TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAAGCCTTCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //