Array 1 742575-741931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 742574 33 100.0 34 ................................. TCCGCACCTTCCCCTCGCGAGCAGAAAAGTTTAT 742507 33 100.0 37 ................................. ATCCCGATAGCGTTTCGTCCAGCGTCGGTACGTAGGC 742437 33 100.0 33 ................................. CACCATCCAATAATTTCGTCCGCATCGTCCCGA 742371 33 100.0 36 ................................. CAGCAGCCTGAAAGGGTTTGGGACGGCCGCAAGCGG 742302 33 100.0 36 ................................. CGCAAGTCCAGCCCAAGCCTCCTTACGGAGGTGGCC 742233 33 100.0 36 ................................. ATGAAAATGTACTGCCCCTACGAGCCGCCGAAAGTC 742164 33 100.0 34 ................................. TTCGAAACCCGGTATATATTGGCCGCGTCCGTTG 742097 33 100.0 33 ................................. CTTTCCGTCCGATACTACTCCAGATGATGGTAT 742031 33 100.0 35 ................................. AATATCATCAGATCGGCGGCGCCGGCGTCCCGCTC 741963 33 81.8 0 ...........CA..............A..TCG | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 98.2 35 GTCGCATCCCGTGCGGGATGCGTGGATTGAAAT # Left flank : CTTTTTGTGGAAGTAGGTGATCTCAATGCTGGTACTCATCACGTATGATGTAAGTACGGTTAACAGCGCAGGACAAAGGCGATTGCGTCAAGTTTCAAAGGCATGCCAGGCCTACGGGCAACGCGTACAAAATTCCGTATTCGAATGCGTAGTTGACGCCACGGAGTTTAAAATCCTAAAATTAAAGCTGCTGGAATTGATTGACGAGGAACAGGACAGCCTTCGCTTTTACCAATTGGGCAACAATTATAAGGGCAAGGTAGAGCATTTCGGAGTGAAAGAGTCCCTTGATTTGGAAGGCCCGTTGATTTTGTAGCGGGAATCCTCGTGGTGCGAATGTGAAGCGCACATGATTTTCCCGGGGGATTCGCACCAAATTTCTTCTAAATTTTGGAATTTGCTTCGGATAATTAACATTTTTTGGGCTTCTATTTTCGATTTGAAAGCGATTCTTCTCTCGTATAGTTATATTTTTGGGTAATTTTAGGCGAAAAATCGCT # Right flank : AAACGAATAAAAAGAGCCCGGCCGCCCTAAGGCTGGCCGAGCCCGGCTTCGCGCGCCATGAGAATGGCCTGCGCGCGATCGACGACCTGCAGCTTGTTCAGGATGTTCGAAACGTGGTTGCGCACCGTCTTGAGCGACAGGCCGAGCTTCCGCGCGATGAACGCGTTGTCGTGTCCTTTCGCGATCCATTCCAGCACTTCGCGCTCCCGGTCCGACAGCTCCGGAAACAGAGGCTCGGCCGGCTTATTCGTCAGCGCGTCGAAATAAAACATCATTCTCCGCGCGATCGAGGCGCTGAAGATGGCTTCCCCGCTCCCGACCGCCTGGAGCGCCCGGACGATTTCCTGCTTGTTCGCTCCTTTGAGGAGATAGCCGCGGGCTCCGGCGCGCATAGCCGAAAACACGGACGCGTCATCGTCGAACATCGTCAAAATCAGAATCCCGATATGGGGGCTGTGCCAGACGATATCCCGGGTCGCCTCGATCCCGTTTTTTCCCGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTGCGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 753758-751888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 753757 33 100.0 35 ................................. AGCAATTGCGGGAGACGAGAAGGCGGATGAACGGA 753689 33 100.0 33 ................................. AACATATTCAGGGTTTGACGACATCAGTGCGTG 753623 33 100.0 36 ................................. TTGTTGTCCTTGAAGGGGACAAAGTAGCATTGTCCC 753554 33 100.0 38 ................................. TTGCCCTTGGTATTGATACACGTCTTTGTCCGTATCGC 753483 33 100.0 36 ................................. ACCCGAGAGGTCGAAATTCCGTGGACATCATCCAAT 753414 33 100.0 38 ................................. ACAAAAGAACCGGTACGTGCCGTACCGAAGAAAGTCAA 753343 33 100.0 34 ................................. GTCATCGGATACACGTATGTAAAGAAAGGCTCTC 753276 33 100.0 37 ................................. TTGCCGCAGAGGAAAACAAGCGTCAGCAGCAGTTACA 753206 33 100.0 34 ................................. GTCTATGGTGTGGTCTAAACGTTCCCAGAAGGTT 753139 33 100.0 34 ................................. TACAAGTAGTTCGCCCGCCATGCGCGGGCGTGGA 753072 33 100.0 33 ................................. GGCCCGACTTGCACGTATTTGATGCCATCCTTT 753006 33 100.0 34 ................................. GGATGTCGTCCGGTCCGTATGCGTTGCCGTCCGG 752939 33 100.0 33 ................................. TTTCCGGTACACGAAATATTGGGAGGGACGCTG 752873 33 100.0 35 ................................. CTGTCGATGATAAAGTAATCGAGCCGCCGGAGTTG 752805 33 100.0 36 ................................. CCGGTTTATCATGCTTAATATGACATTAGCATGGGT 752736 33 100.0 35 ................................. GCAAGCCGCCTTTGTAACCGTAGACGGTATGCAAC 752668 33 100.0 36 ................................. AAGCCGTCGATATAAACGTTGTAACCAAGCACATTA 752599 33 100.0 33 ................................. CTCGTTCCCATCACTTAACAATAGTTTGAAATT 752533 33 93.9 34 .......C...C..................... ATAATATCTAGTCGCCACCGGATTCCCGTTTTGA 752466 33 93.9 35 .......C...C..................... CCCATCCGAGCGGCAGGACTTTAAAGATTTCTTGT 752398 33 93.9 35 .......C...C..................... CGGCGATGGGGCAAGAGTTGGTCAACCGAGCGCCG 752330 33 93.9 35 .......C...C..................... AAGTCTCAGCCGGGCAAGTTCGGTGTCTGCCTCAA 752262 33 93.9 33 .......C...C..................... TTCGATGATAGGAGCCACTTGCTGCGTTGCCGC 752196 33 93.9 35 .......C...C..................... TGAGGAGGCAGCCCCATGGCAAAAGTAACGACTAT 752128 33 93.9 34 .......C...C..................... GGCACTAACGTCGAAGTTCGGATAACGCTTCTTG 752061 33 93.9 41 .......C...C..................... ACTTTATGCTTACGCGAGTATATAATTATATAATAAAGATA 751987 32 78.8 34 ......CC..CCG..............-..G.. CTCGGCATCTTGGAAACAATGGTTATCCAGACAG T [751979] 751920 33 84.8 0 T......C...C..................GG. | ========== ====== ====== ====== ================================= ========================================= ================== 28 33 97.0 35 GTCGCATTCCGTATGGGATGCGTGGATTGAAAT # Left flank : TCGCTTTTTTGGCGGAGCATCCGAATCGGGTTTTTCACAAGGAAGAGCTGTTCGAGAAGGTTTGGGGGCTGGAAGCGAACGGCGACAGCTCCACGGTGACCGTCCATATTCGCAAAATCCGCGAGAAGCTGGAGTCGGTTCCGGCGAGTCCCTCGTACATCGACACCGTCTGGGGGCGGGGTATCGGTTCAAGGTGGATTGAACGCTTCTTTTTTCCGGTTTAGATGCATCAAAAGGGAAAAGGCTTTGTTGACGTTCGATGACACGAAACGCTAAAATAGAGCATCGGTTTTATTTTTTTGGCTCGTTCAGAGCCGTACATATCTTGTGGTGCGAATGTGAAGCGCACATGATTTTCCCGGGGGATTCGCACCAAATTTCTGCAAAAATTTGGATATCCGACTGGTGGATTCACACTATTTGGCTTTATATTTGCGATAATAGCGCCATTATATTCACGAATACATGTATTTTTGGGGAATATTAGGCGAAAAATCGCT # Right flank : GGTATTATGGGAATCGAAAAGGTGCCTCAGGAGATGAAGGAGAAGCTCCAAAAGCTATTTAACGAGTATGGCCTGAGAGAGGGCCATCTTTATGCTGACCTAAGTTCTGGTGAGGTTGTAGTACGTACGAATAAAGCTTCGCCCGAAGATTTACAGTTGGCGAAAATCATAGCAGACATTTATGCAGAGAGGGACCCTGAAAATATTGAGAGGATCGTATTGTTCGGGTCAAGAGCTCGCGGGGATTCAGGCGCCAGCAGCGACTTTGATATCCTTATTTTAGTAGAAGAAGATAGTAAAGATATTCGTTCAAACATACGGGCGGGAAGGCGGCACTCAAGTAAATTTCCTATAGTTGATCTAGACTTGCTTATTTGTACGAACGAAGATTTTAGGAAGTCTACGATTTATGAAAGTGTTTTGAGGGAGGGAATCGTACTTTATGAGCGATGACTACAATGTTTGGTATGGAGGGGCAGAAAAAGATTTAATAGCAGCCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCGTATGGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2852810-2851990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2852809 32 100.0 33 ................................ ATAGAGGGCCGCCGTCCCGATCCAGGGCGGCTA 2852744 32 100.0 33 ................................ GAGATGTAATGGCCGGCCTTGTTTCCAGTCGAT 2852679 32 100.0 33 ................................ CCTTTCCCTCAGTTCGATCACCGCAAGCTCTGC 2852614 32 100.0 33 ................................ CGGTTCGGCACATCGAACCACAGGGCGTCTTCG 2852549 32 100.0 35 ................................ CAACGCCCCACCGGGTCGCGTCTACCGCCCGGGCG 2852482 32 100.0 33 ................................ GGCAAAAATCTTGGACCTTGACGATGCTGAAAC 2852417 32 100.0 33 ................................ TTGTCCCTCTGCTGCTCGTCGTATCGTTTGTGT 2852352 32 100.0 32 ................................ CTATGGCGGTGACGGTAACGTCATAGGGGATT 2852288 32 100.0 36 ................................ CCTCAAGTACCATCTTGCAGTATTCGTACAACTCGT 2852220 32 100.0 33 ................................ AGGACGACCGGATTACGGCCGTCGAGGATTTTG 2852155 32 100.0 35 ................................ ATCTGCCGATCGATGTCGGCCATAGCCTTGTTTAA 2852088 32 100.0 35 ................................ CACGAGTCGGCCGCCGTAGGTGGACATCCCGCCCC 2852021 32 96.9 0 .........................C...... | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.8 34 GTCGCATCCCACACGGATGCGTGGATTGAAAC # Left flank : CGCATGGCCTGGGCCGCGCACGGAGCCGTGGATTGGACTGCATGCAAGAGCAGGCGGTGCTCACGGCCATCGTTCAAAATCTGAAAAGACTGTGCCGGTTTAAGAAAAAGCGACCACAAACCGGTGTTTTGGCATGTCCAAAACCGAAATCCGTGATGATGGAGGCAGTGTCGGACCTGCTCATTTCGGCGCTGGTTGGGTTGTTTTCCTCTTTTTTTATGCCGAAGAGACGGTTACAACTGACCTAAATCACCGGACTTCTAAAAAGGATATTACAACTAAGCCGCCAAACCATCGAGTTAGTCGCTCGCTCATGTATCGCCCTAATCTCGGTGCGAACCCCAAGCGCACATGATTTTCCTGGGAGATTCGCACCCCTTGATACGACTGGGTTTTTAGCGTTTTATCATGAAATTCACCTTGTTTTGAAGTATAATAAAATGAGATTCGCACTAAAGCGCTTGCAAGCCCTTACAGCACAAGGGCTTTGAAATCGCGCT # Right flank : TCCCCTTCGGCGTGACGACGAGGAATTTATCGTAGTCGCATCCCACACCATATGCTACGCATTCATAAGGTCTTTCCGGAAGCCGGCAATCGGGGCTTACCTCCGTAACTCTATCTTTCCCCGGATGGCATGCGGTGAGCAGCCAGTCTTCCTTAAAGGAGTCCAACACAACTCGAAATCCAATGTGGCCGCCGCGCGGCACATCGAATCCTCCGCCAACGCAAACAACCCACCGAATGTCTACGGAGGGTTGTTTCAGCGCGTATTCGGCGCAGAATTGGAGGAATCCAGCGGGAGCGATGACCATGTAGTGCATCCAGTACACTACATCGGGGAAATCCGGCCGGGGAGACGCCCATATGGTGTACCCAGTGCACTACATCAGGGAAATCCAGCCGGGGAGACGCCCATGTGGTGCACCCAGTACACTACATCGGGGAAATCCAACCGGGGAGACGCCCATGTGGTGCACCCAATGCACTACATCGGGGAAATCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACACGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 4 2855229-2854998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2855228 31 96.9 35 .....................-.......... TCCCAGTCGGTAGCAGACATCGACAAAACCTACCG 2855162 32 100.0 36 ................................ AACACGGCGTAACAATTCAGGAGCGCCCGACCTCCG 2855094 32 100.0 33 ................................ TCGGGTGGAGCCGAGGATAGGCCGTTTTTCATT 2855029 32 90.6 0 .............................TCA | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAC # Left flank : GATGGATTTACGTAAATCCGTGCTGCCACAAGCCAGAAATACCTGACGGCTGGTTAATTCGCTCAGCATATGACCTCCAAAGCCTGCACCACGTCGCGGAGCAAAGCGGGATTGAACCCGGCGTCAACCTCGATGACGGCTGCGCCGATTCGGATGCGAAGGCAAGCCGAAGGTGTGGCTTCCGGCTCGGGAGTAATATGAGCTTTGACGAAGGTGGCTGACTTGACAGCAGCAGGGGATGAACCGCTTAGTCTCTTCATCCATGTATAGAGCCCGCGACGATCCACCTGATTGGCTTTGCACCATCTTGCTGCTTTTTCTCCACTGGAACGGAAAGCGGCAATTCGTTCTTCCCATTTCTTCTGTACGTCTTCTCTGGCCATAAAAAATCCTCCCCCAATTGGACTATGAGGAGGATTATCTCACGGTTATTGCAAGGAACGAAGGTGGGGAGAGTTTGACGCTTACGGCATTCCAGATCAAGGCGACATAGCCTTCCC # Right flank : GCGTTTTTCTCTTTTCTCGAAGTTCAGGCTCAATAGGCAAACGAGCGAAGAAGACAGAATAAGGAGATGCGCCCATGGCAGCTTCGAGTAAAGCATTAAGAACTTGCGAAAAAGGACACGAATACTATAAAAGCAGCGACTGCCCCACTTGCCCCATCTGCGAGCAAGAACGCAAACCCGAGTCCGGATTTCTTTCCCTTCTTTCCTCCCCAGCAAGACGGGCTTTGGAGCATGAGGGAATCATTTCGGTCCAACAACTTGCGAATTACAGCGAGAAAGAGATTTTGAAACTTCACGGCATGGGACCAGCATCTTTACCCAAGCTTCGGGACGCTCTAGGCGAACACGGGTTATCTTTCAAAACCATTGGCAGACCATGATCCGAACGATTTTCTAAAAGTCCGGTGATAAAGTCCGCGTAAGCAGGCTTTTATCACGGTTTTGTCGAATTAATATCGTAACACGACTATCGAAAGAGTGATTAGGTATGAAAGCCCGCA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 2859635-2857730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2859634 32 100.0 36 ................................ ATATTGGGGCTTGGGCACGGGCCGAAATTCTCCGAT 2859566 32 100.0 33 ................................ CTGCAAGATTCCGGGGGTATCTTTTGGCAAGGT 2859501 32 100.0 37 ................................ GACGCAGCTCCTTAAACCGCTGTACCAGGCCGCGACC 2859432 32 100.0 34 ................................ TGCTCACCGCTCGGGGAGAGGGCTTCGGGATCAC 2859366 32 100.0 34 ................................ GTCGGTATCAGGTGGAGGGTCGTCCGGGCCGCGC 2859300 32 100.0 32 ................................ ATACCAGTCCGCGACCAAGACGAGGCAAAACA 2859236 32 100.0 33 ................................ TTGCTCCTCGGCCACTTGGTTCCACAAATCCCG 2859171 32 100.0 35 ................................ TCCGCCTTGATCGCTTCGGCGAGCGCTCGCGTCGA 2859104 32 100.0 35 ................................ CACCAAACATCGGGGTCATTGATCATGCTCCTCTC 2859037 32 100.0 33 ................................ TGCAATAACTCTTGAACCGTGATATCACTCATT 2858972 32 100.0 33 ................................ CAGTCGGCAATGAACAATTCCAGATTGTTCTTG 2858907 32 100.0 36 ................................ GACGAGACGTAATATCGATTAACTTTAACGCCACCC 2858839 32 100.0 36 ................................ TCGGCTTGGGTGCCGGACGGATATGGAACCGGCGAC 2858771 32 100.0 37 ................................ AATACCACCAAATCGGCGGTGCTAGCGTTCCGCTCGG 2858702 32 100.0 37 ................................ AGGTCGGGCCCGATAAAGCGATTCCCCTTGAGCGATC 2858633 32 100.0 37 ................................ TCATTTTTTTTGGCTGTGCCATTTGCATCTGCGGCCA 2858564 32 100.0 36 ................................ CGGAGTTTGGGTCGATGATTTTCTCGGCAGGCTGAC 2858496 32 100.0 33 ................................ TGTCCGGATGACCTCCTTGGTGACCCCAAACTC 2858431 32 100.0 34 ................................ TTGGCGGACCCAGCTAGTCCGTCATAGGCTTTGC 2858365 32 100.0 34 ................................ TTGGCGGACCCAGCTAGTCCGTCATAGGCTTTGC 2858299 32 100.0 34 ................................ GTGAAGGCCATAATCGATGTTTCCCCAATTTTGG 2858233 32 100.0 37 ................................ GGCAATGCCACGGTTTCCGGAACTGCTAGCCGAAGGT 2858164 32 93.8 35 ...............G...T............ ACCTTCATTTCGCCCGTTGAAAAGTAACGACTTGT 2858097 32 96.9 34 ...............G................ ATCAATGACTATGTTGTGCATGTCACAAAATTCA 2858031 32 96.9 34 ...............G................ TATTCGGCGTCGAAGGTTCCGAAAAAGCCCTTGA 2857965 32 96.9 36 ...............G................ ATATAGTAGTTGGTCTCAAACCCGGCCGCTTTCAAC 2857897 32 87.5 35 ...........CAC.G................ CGCTGTTGACGTTTTGCCGTTGACTACGAGCGAAA 2857830 32 87.5 37 ...........CAC.G................ TTCGAACTCGATCGGAGACGTTATGGACTTGTTATAT 2857761 32 96.9 0 ...............G................ | ========== ====== ====== ====== ================================ ===================================== ================== 29 32 98.5 35 GTCGCATCCCATGTGAATGCGTGGATTGAAAC # Left flank : ATTGGATGGTTTCGCAAAGCAAGTCCTTGCACGCTATTGAAAGAGCGGCCAGACTTCATAGTGAGTTTGTAAAAATTCATCCTTTTGTTGACGGGAACGGGAGAACGGCACGGCTGCTTTTAAATTTTGAACTGATGAAAAACGGATATCCCCCAATTGTCATTGAAAAGGAAAATCGTTTGGAGTACTATTCCGCTCTCGATGAAGCCCATACATCCGGAAATCCGGAAAATTTTGTCGCATTCATTTCGCAAAAAGTCGATCAAACCTTTGATTGGTACCTAAATCTACTCTGACTCCCCCAAAATGAAGTTAGGTATACCTTAGCATTGGTGCGAACCCCAAGCGCACATGTTTTTCCCGGGAGATTCGCACCCCTTGATATGCCTGGGTTTTCGGCTTTTTATCATGAAATTCCTCCTGTTTTGAAGTATAATAAAATGAGATTCGCACTAAAGCGCTTGCAAACCCTTGCTGCATAAGGGCTCTATTGCCGCGCT # Right flank : GCTGTTGGCATTCCGTAAGCGTCAAATAGCCCCCACCTAGCGGCGGGAGCTCAGTTCGACTAATCTGTTGTTACTTTTTACTTAATCGGCACTCAGCCGGTAGCTCGTGCGACCATGGCATGAAGGGTTCGAGCGCGTCGGCATCGAGCGGTCCAGAGATTTGCGGCAACTGCTCGAAGAGGTACTTTAAGTAGTTGAACGGGTGCAGACCATTCTCCTTGGCCGATTCGATCACGCTGTAGATTACCGCGCTAGCCTTCGCGCCGCGAGGCGTGTTGGCGAACAGCCAGTTTTTGCGCCCGATCACGAACGGTTTGATCGACCGCTCGCTCCGATTGTTGTCGAGCTCCAGCCGCCCATCTGACAGGAACGCAGTAAGCTTATCCCACTGATTCAAGCTGTAGGCGATCGCTTGACCGGACAGGCTCTTCGGCAAGGTTTTGGACCGTTGCTCCTTCAGCCATCCATGATAGGCGTTAAGCACCGGCAGGCTTTGCTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGAATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2861678-2860638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2861677 33 100.0 34 ................................. CGGCCCTACGATCGCATACAGGAGATCGTTGTAA 2861610 33 100.0 33 ................................. CCAACCCGTATCGGAGAAAATAATGAAATCCGG 2861544 33 100.0 31 ................................. TCGGACCCGCCTCCTCCCGATTGCGGTTTCG 2861480 33 100.0 33 ................................. GGTTCGGACGCAATCCGGGCCGGAAACATCCTC 2861414 33 100.0 35 ................................. TATTTTGCGGCCTATGACGAGTGCTACCGGTATTG 2861346 33 100.0 35 ................................. GTCCGCAAGCATGTCGGCAGCTCGCAAGCTGAAAT 2861278 33 100.0 34 ................................. GCTCCGGAGAATCCGAGTGTCGAACAAGAAATCG 2861211 33 100.0 34 ................................. ATAGGTACGGATTACGGTGTACCGCACGCCCTCG 2861144 33 100.0 36 ................................. CCGTACTTGTCTTTGAAAACGAATGTTCCCGGTGTG 2861075 33 100.0 34 ................................. TTACCCAAAGGAGGACAGATGAATGATTACCATC 2861008 33 100.0 34 ................................. CGGAAGAATCCAAGGCTTTCCGCTCTTTCCGTCC 2860941 33 100.0 35 ................................. TGCCAAGGTTCGAGGATGAATGGCTTACCGCGAAG 2860873 33 100.0 35 ................................. CATTTGCCGCTTAACGGCAATACGGTCACGAGAGG 2860805 33 100.0 34 ................................. ATCTGCGGATTATCCTCCGTGGTGACGGGTTTGC 2860738 33 93.9 35 ......C............A............. AGCAAATCAAGCCACAGAGCCACTTTCAAGCGATC 2860670 33 72.7 0 .C...........C.A.AGA..CAA........ | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 97.9 34 GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Left flank : CTGCAAGCCGTTGGGCCATCATAAAACGTTCGTAGTCCGAACTTCTCCGGTGCGACAAATACGCGATGTCCACGTCACTATCGACGCGCATCCGCTCCTTTGCCGCCGATCCGAATAAAATGACCGCAAACGCTTCGCAATTTTCAACGAGAAACTGAACGATCTCCTGCGTTTGTTTCTTCGTCAGTTCCGTTTTCATCTTGCCTCCTATTGAACTTTGAACTTTTTTGGGGAAAATAGGATTGTCACCGCAAAAGCGAGTAATCGTCAGAACCTATAGAGCTTTTTTTCTATCATAACCTCTTTTTTGGCGGAAATATACGGCATCACAAGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCCCTTGATATGACTGGGATTTCGGCATTTTATTATGAAAAACTACCCGTTTTCAAGTATAATAAAATGAGATTCGCACTGAAGCGCTTGCAAACCCTTGCCACTCAAGGGCTCCGCAGCCGCGCT # Right flank : CCTGTCGCCCATCCGGTATTATCGGGAGTAGAATTAATTTTCTCCCCAAAGTGTAGGGAAGAGGAGGAAAATGATGTTTAAAACAATCGACCAAAAAAAACAAAAACTCGATTCCAAACGCCCTCTTCCCGTACATACGCTTAACAGTATCCGAGAGCATTTAATTGTAAATTGGACCTACAATTCAAATGCAATCGAAGGCAACACCCTGACTCTATCCGAAACCAAAGTCGCTCTTGAGGGTATAACGGTCGGCGGAAAAACGATCAAAGAACACCTCGAGGCCATCAACCACAAAGAAGCGATTCTCTATGTCGAAGAACTGGTTAGAAGCAACGAACCTTTCTCGGAATGGCAAATCAAAAGCATTCACGGCTTAATTCTAAAAGGCATCATGGATGATCAGGCCGGCGTTTACCGGAAACAAAATGTACTGATCAGCGGTGCAAAGCACATTCCGCCGGACTTTAGTCATGTCCCTTTTTTGATGGAGCAGTTGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTATGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2863636-2862932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2863635 32 100.0 33 ................................ TTGTTGTCGCGGGCATCTTTGATCAGCCCGCAA 2863570 32 100.0 35 ................................ GAACGTCCGGAGGCTGTCACTAAACCAATCTCGAC 2863503 32 100.0 34 ................................ CTTTGGTTCTCTTTCCATTGGATCAAATCGTCGC 2863437 32 100.0 37 ................................ GGAACGCTTGATACTATCCCTCAAGAGTACAAGGACA 2863368 32 100.0 34 ................................ CAGTTCCTTACGGTAATCGTCCCGTTCTGCCTTA 2863302 32 100.0 35 ................................ TCCAATTACCCTGGTAGCTATGTCTACGACTCCTG 2863235 32 100.0 36 ................................ TCTTGCTTGCCGGAATTCTTCCAGCGTCATTGCGTT 2863167 32 100.0 34 ................................ AGGTTGTGACCGATCTTGGCGAGACGATCGACAT 2863101 32 96.9 38 T............................... GTCATCCGGCTCTTTCTCTTTTGCTGACGCCGGCTGCG 2863031 32 90.6 36 .......T........G..............T CGGAAGCGTTTCCGGTTTGGCGTTGATGTCGTCGGC G [2863013] 2862962 31 87.5 0 .........-..G..A.......A........ | ========== ====== ====== ====== ================================ ====================================== ================== 11 32 97.7 35 GTCGCATCCCATACGGATGCGTGGATTGAAAC # Left flank : ATTCGCGAGAACTGCAGAGAAGAGGGAGCTTTGTATACCGGGCCTATGAACCGGGAAACCACTCTATCGAACCTAAAGTTCTCGAACGATTGCTCAAGGTGACCGATTTTAATTTTCCCGATAAACCTCTGGTCAGCTATCCAAAAGTACATGGGAGAAGAAATGAGGAAATTTACCAATGGTTTGCGGCTAATCAATCCTTGCGGATTCAAAACGGAAAAATCAAACATTCCTCGTTTCCTCCTGTCATTTTGGAGCAACTGCCGCATATCGATTCCGCTGATCAGAAATTGCACAAGTATATTCAAATCAATCCAAAGTAATATTTGGGAGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCCCTTGATATGAATGGGATTTCGGCATTTTAGTATGAAAATCCACCTGTTTTCAGGTATAATAAAATGAGATTCGCACTGAAGCGCTTGCAAACCCTTGCCGCTCAAGGGCTCCGTATCGTCGCT # Right flank : AACAAGCATCAGTAAGATGTAGTTCCGTCGTTAAATCGAATGAATCCTATATGATTTAAATTAATCTACATCTACGCCCCAAAATAAAAAATGGAACGAAGCAGAATCACCCTCTGCCCATCCCATTGTTTTTTCCTCCCTATACCTTATGCCCCGTCCGGCTCCGAACTTTTTGCCATGTATACCCGGATCCTGTCCGCAAACGCCGGAAAGTCGTTCAAATGCTTCTCAATGATCGCCTGAACAATTCTGACCTCAATGTTGCGAAAACCGACCATCGCTTTCAGGTTGTTGCACAGTTCTTCCGAGATCACTTGCTCCCGCAGCAAAAAATCAAATGCCTCCTTGCTCGTTTGAGGCAATCCGAGCTTTTTTTCCGCCACCGTGTGCATGGCCAGATCGATACATGCCTCGCAGGCTCGTTGCAAATTCAGAATGATCGAGTCCTGCTTGGTCATATTCCCGAGGTTGGCCGGGTCTCCTGCATATTCTTCTTGAAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATACGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 2874796-2873616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHKM010000002.1 Cohnella algarum strain Pch-40 Cohnella2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2874795 33 100.0 35 ................................. TCAATTAAGGTGGAAATATCGACGCCGAGAAGCTC 2874727 33 100.0 34 ................................. TATAAATCAATGGCATGGGAGCGAGCGAGGAAGC 2874660 33 100.0 35 ................................. CAAAGCTTGTTGCTCAAGAGTTAAAAAAGGAAATC 2874592 33 100.0 35 ................................. AGAGACTCCGTATAGGCGTTTGTGATGCGATGATC 2874524 33 100.0 38 ................................. CCAAGACCGGTTCCGGCAAAGATCGCCGCACGACCCCG 2874453 33 100.0 33 ................................. GATGCTTGTAACATAGGCGTGCGTCGTGTACAT 2874387 33 100.0 35 ................................. CGGCTTAAGGTACATGCTTTTCGTCTGTCCAAACA 2874319 33 93.9 38 ............AT................... CCTCAGCCTCCCTGATCAATCGGTCAATATACCAACGT 2874248 33 93.9 33 ............AT................... CCGTTCAGGTAATGGAAAATCATCATCGAACCC 2874182 33 100.0 35 ................................. GCTTTGGTTGATACTTGCCTTTGCAATTGCATCTG 2874114 32 97.0 34 ...........-..................... AGCATCCCGAGGTCGTCATTGATAAACGCCTCAC 2874048 33 97.0 34 .................A............... TGAACGTACTCTTTATATCAGCCATAGCCAGAAC 2873981 33 93.9 33 ............AT................... CTCGTCGATTGATTTAAGCACCGCGGCGGAATC 2873915 33 87.9 34 ..........A.AT..........A........ TTCCCTATAGATCAAGGTGAACGTGTGATGCTGA 2873848 33 90.9 34 AGG.............................. TCCTCTGAGCGTTTCTGTCTGATCGGAGCAGATC 2873781 33 93.9 34 ...T..............G.............. CTTGACTGGCTTGTCCTCGCCGTGCTGTGCGGCC T [2873767] 2873713 32 78.8 35 AC.........AAT...-.A............. CACGAAGTATCGGGTAAACGTTGTACGGAATGTCC 2873646 31 81.8 0 .....C..........A-...-..T.C...... | ========== ====== ====== ====== ================================= ====================================== ================== 18 33 94.9 35 GTCGCATCCCGTGCGGGGTGCGTGGATTGAAAC # Left flank : CGCTTGGAGCTCTTCGCTTCGGAGTTGGCGGTTGACTTCTGAAGCGCGCGGCTTCCGAAGCCTCCTGTGAATTTTTGGGGCTTTCCTTTTAAACGGTCATACCTTTTTCCTCATTCTCTATTTGCCACGGTCTTATCTTGGCGTTTCCTTTTCCAATTGCCGTAGAATGTGCAAAACAGATGCGGCCGTATGGGCGCGAACCCCAAGCTAGCTTGAAATCCCCGTGAGGTTTGCACTCCTTTCCGCGTGCCGGGGGCTGGCGGAAGTTTCGGAGGCAAGAGCCTTCAGAGATGCAAATCGCACAATTTTTTCACTAATGATCCCGAACTCTGGTGCGAACCCCAAGCGCACATGATTTTCCCGGGAGATTCGCACCTCTTGATATGACCGGGTTTCCGGCTTTTTATCATGAAAATACCCTTGTTTTAAGGTATAATAAAATGAGGTTCGCACTGAAGCGCTTGCAATCCCTTGCCGTTCAAGGGCTTTGCAGCCGCGCT # Right flank : CCGTCTGCTGGATGGAGAACTTAGAGCCCAGTCAAGTGGTCCCATTCCACCTACACTGGTCTAAACTCAGCAGGTAGTTGGCATCTCCTTAATTCAATCACGCCCTATACAAAGTGCTTGCAATCAGTTCGCAGGTACTTGTCCAGAACTTAATGTAGCCAATCACGACAAGATTATCGTATGTTGGTTGTGGATTTTGGTTTTTCTCATTTCTAACCCTCAATAAAATATAGCCAATACCAGCTTATCCCCTTCCCCGCTTTACCAACTCTAGATCCCAATTTCCTATTCCTAAGGCAACCAAAGTAATAATTTGTAAAGTTTTGTGGTAAAATGTTGATATAAATAAATCTATGTTCCTATTTTTATATCGAAAGTTAGGTCGATGCGATGTTTTCTCATCTGGAAACGTTGACGCTACGAGCATCGTTTGTAGCCAAAAAAGAAGGAAGATTGCCTCCTTATTTAGGTTCAACGTTAAGAGGTATCATCGGGCATTG # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //