Array 1 70491-71612 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWUJ01000001.1 Pantoea sp. M_4 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70491 29 100.0 32 ............................. GCACATGTAAGCCCGCCGCGTGCGGGCTTTAA 70552 29 100.0 32 ............................. GTCTCGCAATGAGCAAATACACAGACTGTATA 70613 29 100.0 32 ............................. CTGACTCTTCATGGCTGGCTGATTCATGAAGC 70674 29 100.0 32 ............................. ACCTGTCTGATTTTGAGCGGGATATTAAGGGC 70735 29 100.0 32 ............................. AGTACTTCTTTCGCCCATCATTCACAGCGATG 70796 29 100.0 32 ............................. TTGGCGGCGACTGGATCGCAGATTGGGAGGCT 70857 29 100.0 32 ............................. TGCGCTGGTGCCTTTGACGCGATATCCGTCGG 70918 29 100.0 32 ............................. GCTTAACAGTCAGGCCGGTCAGGTACTGGCTG 70979 29 100.0 32 ............................. AACAATTCGAGAGGCTAGAGTGACGATACCCG 71040 29 86.2 27 .........................NTAC TTCTTTCGCCCATCATTCACAGCGATG 71096 29 100.0 32 ............................. TGCGCTGGTGCCTTTGACGCGATATCCGTCGG 71157 29 100.0 32 ............................. GCTTAACAGTCAGGCCGGTCAGGTACTGGCTG 71218 29 100.0 32 ............................. AACAATTCGAGAGGCTAGAGTGACGATACCCG 71279 29 100.0 32 ............................. GTTGAGCCCGTGTCCGGCTGACGCGGGATGCA 71340 29 100.0 32 ............................. GATTCAGCCTGCGCCTTGTCAGCGGAGAAGAA 71401 29 100.0 32 ............................. CGTGGCGCTACCCATGCCCGGGTAACGCCGGA 71462 29 100.0 32 ............................. GAGTATGTGGGCAGTGCCATTACGCTGACGCT 71523 29 100.0 32 ............................. GCGCAGAGCTAATAGAAATTGACACAGAACGA 71584 29 89.7 0 .......G.A..C................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CAGAGCGATCCGTACGCCTTTATCCGTAACGCCTACTTCCAGCGGCACGACTTCCTGGCGCGTGGCGGTAAACTCAAGCCGGAAGATAATCCTAACGCAGCCGCGATTCAGGATGACCTGAAGGATATCGATTCGCAGTAATGTTACGGTCCTTAAAAGGGCGCGTCACATACGTCGTTTTGATTTTATTGCTGACGTCTTACCCGGTCTGCTGTAAGACCGGGTAAGAACAGAGTTCAGGTTCAGGCTCTTCCTGATCGCCCGATTCTCGTCGTTCATGCTATGGAAAACTTTTCTCTTCTGCTTTTACTTCTGACTTAATTCGTAACGACCTTTCCTGTTTGGGGCTGTTATTAACCTTCTGCCTTCCTGAATAACAGTATTTTTTCGACAGATTTGGTGTCTGAGAATAACGGCTCATAGGGGCAGATCCGGATGTAAAATTCGGTAGAATTTTCTGGTGCGAAAAAACGCTTTGTAATCAGTCGGATAATTTTAGA # Right flank : GCCGCGATAAACCTGTAATGAAAGAGTCCGGGAAAGGTGAGGGTAAATCTTCGCTATGCGAGCGTTGATTAACCATGGTGAAGAAAGACGTCGAAGAGTGAGAATTTCTGGAACTCCCGTACCTGCCGGGAAAAAGTCGAGGTTGGTCAGCTGTCTGAAGGCGACTCATCAGAGTCGCCTTTTTTAAACCCGTCCCTCGATCAGAACTTGTAGTTAAAGCTCGCACCATAGAGCCAGGCCTTGCCTTCAGAGGTAAAGGTATAAGGACCTTCTTTCACCGTTACTTTCTGCCCATGCATATAAGAGATACCCAAATCGACTGAGGCATCATCGTTAAAGGCGTAAGACGTACCCGCACTCAGCCATAAACGATCCTGGTCCGGAATAGAGATAGAACGCTTATCAGCCGGTACCGGGCTGTCATCAAACGCAATACCGGTACGGAAAATCCAGTTTTTGTCGTAGGAATAGGTTGTGCCCAGTGCAATGCGGTAAGCATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 121146-119928 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWUJ01000009.1 Pantoea sp. M_4 Scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121145 29 86.2 32 A...........CC..............T CGTTCGAAGCGTTTGCTGCGCCCGGTTTAAAC 121084 29 100.0 32 ............................. GCCCGTCAACGCACTTCAAAAAAATAACCCCT 121023 29 100.0 32 ............................. GAATGCCTGTCAAATCAGCAGCCTGTTTTCTG 120962 29 100.0 0 ............................. - Deletion [120934] 120933 29 96.6 32 N............................ GAATGCCTGTCAAATCAGCAGCCTGTTTTCTG 120872 29 100.0 32 ............................. CGCGATATGCCATTTGATGGTGTGGCTCACAA 120811 29 100.0 32 ............................. CGGTGAGCACACTAAACAGTGACGCAGAACCG 120750 29 100.0 32 ............................. GGATGGCAATACCTGGGCGCATTTCTCATCGA 120689 29 100.0 33 ............................. CGCATCCATCTGCGCACTGGCGGTGTTAATTGC 120627 29 100.0 32 ............................. CCGCCAGGGTGATGGCGGACAATCTGAGTGGC 120566 29 100.0 32 ............................. CTAACCGCTAAGAAGTGCAGAACACTCATAAC 120505 29 96.6 32 .................A........... GATGCCGTTCTGCGTGTTACTCCAAATGGAAA 120444 29 100.0 32 ............................. GCCCCGTTTGTTGTGTCCGGTTATTATGGCTA 120383 29 100.0 32 ............................. GGGCCCGGTTACGGCTGGGGTTAGGGTTTAAT 120322 29 100.0 32 ............................. TACCACGTCGAGCAGAACAAACAGGCAACCGC C [120317] 120260 29 100.0 32 ............................. GCGCTCACCAGCCACAGACGTGGGTCTTCTGA 120199 29 100.0 32 ............................. GGGCGATCAGTTCCTGATCCGCTCCGGGGCGA 120138 29 100.0 32 ............................. ATTTATTTTCGGAGTATCGGGTAACGGGGCAG 120077 29 100.0 32 ............................. GTATTTACTCGTATGAGCAATAAAAAATTGCA 120016 29 100.0 31 ............................. CTGTCTGCTTAGACTGCTTTGAGGTGCTATG 119956 29 72.4 0 T....T.....AC.........AT.G..A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.7 30 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ATGCTGCGGCTCATGTGCCTCGACCTCTTATCGTAACGCGGCCTCGAAAAGCGGCTACCAAAAAGTACTAACATACGGCTCCTGCAGGGGCCGTTTTTAATGATGCCATCCGCACGCTCAAGCACGGAATATCGTTAGTCTGTTCATGGCATGCGTTAGTCTATTCATGGTAAGCAGGTTTTGTGACTGCCATAACGCACAAAATTCCAGCTAAAGCCGGCTACTTACCATGAATAGACGAACAATCGCCATGAATCACCTAACGAAAGGCTGCAGCTGCCAGTCTTTGCCTAACGTTCACCATGAATCACCTAACGTTATTCACCCGGCAGTAACTCAGGGCGGCGGGAATGGATCAGAAAGTAAACGCCGCCATCCTTTTTGACTTCCGAATATGTCAGATAGCCTATCTTCTCCAGGTTTTTCATCTCGTTGCGAACCGCTAAGTTTTGGGCGCTGATCCTGGAAGTCAGGTTAGACGCTCGAGCAGGCGCTCAAGG # Right flank : GTCTTTATCAGCACGCTATGACTGAAGCCCGGCTCTCCCCATGCTGTGCGGCATCAGCCTGAAATCAGAACTGGTAAGTCACACCCATCGCCACAATGTCGTCGTTGTTAATCGACAGCGCGTTGTCATCATCCAGCTGGTTGATTTTGTAATCCACGAAGGCGGACATATTTTTGTTGAAGTAGTAGGTTGCACCCACATCGATATACTTCACCAGATCCGCATCGCCGATACCGTTTTCGATATCCTTGCCCTTAGTCTGTACGTAGCCGATTGACGGACGCAGGCCGAAATCAAACTGATACTGCGCCACCAGCTCGATGTTCTGCGCTTTGTTGGCTGCGCCCGCGACGGCAGCGCCGGTATTACGGTTGGTACCGCTGATTGGCGTCATGTTGCGGGTATCGGTGTAAATCGCCGCCAGGTAAACGCTGTTGGCATCGTACTTCACGCCTGCGCCCCAGGAATCTGCACGGTCACCGCCGCCATAGGCGCGCGCC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123895-123316 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWUJ01000009.1 Pantoea sp. M_4 Scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123894 29 100.0 32 ............................. CGCGCAGAACTGACGGCAGCTACACCAGAGGT 123833 29 100.0 32 ............................. CGCACTCCCCTATATCCCATGCCTACCGGGGA 123772 29 100.0 32 ............................. AGCGCATTGATCGCGAAATGGAGGCCATGATT 123711 29 96.6 33 ............................C GCTGGCACCAGCGGGTTTATCCGGCTCGTTGAG 123649 29 100.0 32 ............................. AGTTCATGCAGAAGGCATGGGAGCAGGAATCA 123588 29 100.0 32 ............................. CATTTGGGTGTGGACGTCAAAGATTGTCATAT 123527 29 100.0 32 ............................. CGAACCCGCCAGCCTAAAATTTCAGCACCAAC 123466 29 100.0 32 ............................. CCTATGCGTGGGCTTCCGAGATTGCGCTGGGC 123405 29 100.0 32 ............................. GCACCGACCATGAAACTCACCGAACCCTCGGC 123344 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGATCTGGACCTTATACCGGCCAGTGATTTCGATGAGAAACCGGTGAAGCTGAGCGCCTGATAGGGTGTTTCAGAGGAAAAGGGCGAGTGGAAACACTCGCCCTTTTTTGATCAAAGTCTGGCTGGTTTGCTGTGAAAGCGAGTTTTCAGACGGATCCCGGTCAAAGTGGAAGGATGTTAACGTCAGTTTCTGACCATTCGTGCCGCGCAATTACGCACCTCATCTCTGAAATGGGCTCGTAGCCGCGCCAGCGCTCCTGGCGTTTATTTCGGGCGGCGGGATGTTTTCCTCGTCCTCCCTTCGCAATAAGCTTATGCATTACTGCAAGGTTCTCTTTGATAGGGTGTTGCCAGTACCCTCCAGGCTCCCATTGCGGACGCTTTTTTGCGCCAGATTTTTACCGGAAAATAAATGTGCATTTGGCTTAAGTCCGCAGGTAAAATTCGGTGGAATTATCAGATGTGAAAAAATGCTTTGTAATCAGGCTGATAATTTTAGG # Right flank : ATCGTGCAGAGTCATTGAGAATTAATTGCCATGACTGTCACGTTACTTTTTGCGAAAAAACTGGGTTGTACGCGACCTGAAAGGCAATACACTGGGCACCAATCCCATGCTAAACGTACTGCTTAAAAGCATCATTTAAGCCAGATTAAACCGACCGAAGCGAATTGATAATTTAAGGCTATTGATTGATTTCAAATGTTTGCCGATATTAGGCTATACGCGCGATACGGATAAATAATATGGATATGACGGATAAAGCTGTATTAGAGCCGATTGGCCTACAGGTGAAAGATGCAGTTAAGGAGATTCTTTTCCAGCATCTCACAAAGGATAAGACCGCCGTTGCTAATCGCTCAGTTCTGTTTATGGCTGGCTCACCTGCCGCTGGCAAAACTGAATTCATAAACAATGTGTTATTCGAAGGAAAGCAAACCAACTTTGTCAGAATAGATGCCGATGATTTTCGCTGGTGGTTCCCTTATTACAATGAAAAAAATTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //