Array 1 145604-147158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFYG010000007.1 Pectobacterium aroidearum strain MY19 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145604 29 100.0 32 ............................. CGTTGATCTGGAATAACTACGAGGTCGATGAA 145665 29 100.0 32 ............................. TCGGATCTCGACCTGTAGTACCGCATCGCCCC 145726 29 100.0 32 ............................. AAACGACTCATACGATCCGCTAGCCTCACTAC 145787 29 100.0 32 ............................. CTGGTTGCAGAGATGCGCCAGAACCCTATCGA 145848 29 100.0 33 ............................. TTGGGCCATTCGATCTATGAAGTGGATATATGC 145910 29 100.0 32 ............................. ATCGTCAAGACAAACGATGATGTCCTTGATGC 145971 29 100.0 31 ............................. CCAACCCATGCACGTCGATAACGCGGCGGCA 146031 29 100.0 32 ............................. TGGCGTCAGCATTAGTTACCGCATTCTCAACC 146092 29 100.0 32 ............................. TGCAGTGGCCGCCGCCCCCATCGTTTTCTGGA 146153 29 100.0 32 ............................. ACTCGAAAACCTGTTTAATAAATATCTGCGTA 146214 29 96.6 32 ............T................ GAACGTATGAAACTTTCTGATGTTGCAACCAT 146275 29 100.0 32 ............................. CACCAACGACATGATGTCGCGCTCTTTAACAT 146336 29 100.0 32 ............................. TTAGCGGGTCTTCTCGATTGGGACGCATTGGA 146397 29 100.0 32 ............................. TAAAATCTTTCGCTATTAGTCTCGAACGCATC 146458 29 100.0 32 ............................. ATGTATTGAGCCCCCTCGTCGGAATGGCAGTA 146519 29 100.0 32 ............................. CCGTAATTTCAAATGGCCGGCTGTGGGTATGG 146580 29 100.0 32 ............................. CGCTCCAGTGCCTTATCCGACCATCGCCTACC 146641 29 100.0 32 ............................. ATAATCGGTTTTGATATGGGTTTTGAGCCCAC 146702 29 100.0 32 ............................. AAAATGAGCATTATCACATTTGGCAAGCCCGA 146763 29 100.0 32 ............................. GGGAGAAAACTCGGAAATATAAAGCCGAGGCC 146824 29 100.0 32 ............................. CACTCCCTCGCCATCTGTATTAGCACCGATAC 146885 29 100.0 32 ............................. GGCGATGCGGCCGAGCTGGCAGAAAATGAGAT 146946 29 89.7 32 ..A.........T..........G..... TAGGGCATAACAGAGGCACTAAAGACGCTGCT 147007 29 96.6 33 .............G............... TGGCACCCCACGGGATGCCTATATCTGCACAAC 147069 29 96.6 32 ............T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 147130 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGAATTACGCCTCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGCGACAGCGGCCACCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAGAATGTCCCACTGCGTTTACGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAGTCCGTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148031-148363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFYG010000007.1 Pectobacterium aroidearum strain MY19 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148031 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 148092 29 93.1 32 ..G..........T............... TAGGAGTTATCGCTATCATGAATATCAGTACG 148153 29 93.1 32 ..G.....T.................... GGATAACAATTTCACCGGGCTATTTATATGAC 148214 29 100.0 32 ............................. GTCACTGGTACATAAACTCCTGCAGCTATAGC 148275 29 93.1 32 ..G........A................. GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 148336 28 86.2 0 .....-......T..........G...G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATTCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGAATTTGACGTTGGATCAGAGCCATATAC # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTACATGTTCTCCGCATGGGCCAAATCCCGTTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCGTTTTTGCATTCGCCGTCACGGTGATGCGCGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCCGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTAGGACGTGAAGAAGGCTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCGATTAAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //