Array 1 570827-572287 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734720.1 Planktothrix prolifica NIVA-CYA 540 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 570827 37 100.0 39 ..................................... ATCTACCTCTCCCGCATCGGCACGGTCTTTATAGTTCTG 570903 37 100.0 38 ..................................... GTCCTAATAAGTAGCACCACGAGGCATCGAAGCTTTTT 570978 37 100.0 41 ..................................... TTTCCGCTTCCCACCCCATGCCCATTCAACTGTAATTTTAT 571056 37 100.0 39 ..................................... CAATTCATATTTATAATTTTGTAAACGGATACATTTCTC 571132 37 100.0 40 ..................................... GTCCCCCTATTAATTAGGCGATTTTGATAAACTTGGTTAA 571209 37 100.0 37 ..................................... GAATCTGAATATCCGACCTGGAAACGAGGGAAAAATA 571283 37 100.0 36 ..................................... TGTGACGATTATAAAAACCAGTTAGAACATCGGTTC 571356 37 100.0 39 ..................................... ATCCGTCCGATCCTCTGGTGACTTCAACGGATTTGACAT 571432 37 100.0 36 ..................................... GATTTAGCAATTTATTTATCAATGCGAGATTGTTCA 571505 37 100.0 37 ..................................... ACATTTAAACCGGGTAATTAACCCGGCTTAGATTAAA 571579 37 100.0 39 ..................................... ACTCAGGACACGCTAGTTTTAAGATGCTAAAATAGTCAT 571655 37 100.0 37 ..................................... TTAAGCGAAATGAAACGCTTAACTAATAACAACAATA 571729 37 100.0 39 ..................................... ATTGTGGGATGTGCAACCAACAAACAACCCAATAACTAA 571805 37 100.0 35 ..................................... CAAAGGATGGAAACCAAAAACCAATACAATTAAAA 571877 37 100.0 36 ..................................... TTTGGTTTTGACCGTCTCAACTTCTCGCTTTTCAAT 571950 37 100.0 36 ..................................... CTCGTAGGCGGTGGTGATCATAAACCTTGAATCCTT 572023 37 100.0 46 ..................................... TTAATTGAAAGATATTTCCCGCTAAACTCCAACACGGAATCCTTAG 572106 37 100.0 34 ..................................... CTCTTCTTTCTTCTCACCGGATGCAATCATGTCA 572177 37 100.0 37 ..................................... CGGACAGGATTCAATGTCAAATCTTGGCTGAACTAAA 572251 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 20 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : CAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATTAGCCAAAAGTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGATTTATTGTCGGGGAATGATAGCCATTGATTATGAGAAGATTAAGAATTATAGCAATCCTATTTGAGTTGTGTAAAAGGGAACAGGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATA # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGCCCTCGTTATTGCAACAGATTATCAATAACTAATCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCATGACCTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGTTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGAGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 2 1932612-1933699 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734720.1 Planktothrix prolifica NIVA-CYA 540 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1932612 36 100.0 42 .................................... GTTCCCACATCGTATCGTAGTCAGTAGAATTAGAATTAACTC 1932690 36 100.0 36 .................................... GAGAGCTTGGTTGGCAGAAGCCGAGGCAGGAGTACA 1932762 36 100.0 36 .................................... TTTGTAGCCCCCAGTTGGTATGTTAAAATTCCGTTG 1932834 36 100.0 39 .................................... TTCAGGGCTTTGTAGGCGTTCATCCACTTATTGTTTTTT 1932909 36 100.0 39 .................................... TGCGCTTGATTGCGTCTTTTTTTGAACATCCCCATGCTG 1932984 36 100.0 40 .................................... TCATCAAGGGGTGAATCTTTCAAGTCCATTTGGTAAGGAA 1933060 36 100.0 46 .................................... TCATATTCAGGAAAAGCTTCTTGGATAAAACAATCAACGTTTTCTA 1933142 36 100.0 44 .................................... AAGGGACGCTCTGGCATCACTCAGGATTTTATTCATTTGTGCTT 1933222 36 100.0 38 .................................... CCAAAAATAAGGGAGTCAGGAGAATTGATTTGTTTTAT 1933296 36 100.0 40 .................................... CTTCATTTGTCGTGATTCATTAGACATGATTGATTCCCCT 1933372 36 100.0 37 .................................... ACCATCATATCCATGACTTTTTTAACGTTTGATAGAC 1933445 36 100.0 38 .................................... TATTCGCCTTCTGGCAGTTCAGTGGGCTTCACGATTTG 1933519 36 100.0 36 .................................... TTGAAGACTTTATGCCAGTTAATTTCAACACCCCAA 1933591 36 100.0 37 .................................... TGGATTAGGCTGTAGCTTTCCGTCTCAATATCTCCAC 1933664 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 15 36 100.0 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAAGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAACTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CTCGTTGAAATAGATGGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCCACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCATATAAGCGACCAGCTAAAACCCATCTGCTCTTGTGATTACCCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTGTGGATTCTCTCTGTCGAGTGTCAAATCAAAGCAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAATAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 3121385-3120554 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734720.1 Planktothrix prolifica NIVA-CYA 540 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3121384 36 100.0 35 .................................... AGCCGGGGGCCTCATTCCTAAGCGCGAATCATATT 3121313 36 100.0 36 .................................... TCAGGTGTTCGTTGTTCTTGATTGGATAGGGGAATA 3121241 36 100.0 36 .................................... AGGGTTTGAAGCCACTGGTTTTGCGTGGGCATTAAG 3121169 36 100.0 36 .................................... ACAAAATCTCTAAATCTCACAGACGCATCCTATCGC 3121097 36 100.0 31 .................................... GGCATATTAGACGCAGCTATGGACACGCGGA 3121030 36 100.0 40 .................................... TGAATACTTCTTTGTTACAGATAATAAAGTGTTCCGCATT 3120954 36 100.0 38 .................................... AGTGTATATAAGAGTCTGGACTAATAGGGAGATACATT 3120880 36 100.0 30 .................................... TCCATGATTGAGATTCATAATTTAACTTGC 3120814 36 100.0 36 .................................... TTCTTTAGGCGATAGCCAACACGCTTCTTTCTTCAT 3120742 36 100.0 41 .................................... TAGAAATTGATACTACTTCCAGTGAGAGACTTCACCTCAAC 3120665 36 94.4 40 GG.................................. TCTCCTTGTTCTGGTGATTACGCTTGTCGGTGTGCCTATC 3120589 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.5 36 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTCTATATTGTTGCCTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGGAAGCGGGTTCAATATTCGGTGTTTGAGTGTGTGTTGGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAGGTAAATCTAGCTGAGGATAATCTGCGGTTTTATCCGCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGGTGTTTATAGCTTCGCTATCCCTCTGGATAGGGGTTCTGACGTTTTGATTCAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTCTGAGCCCCGCAAACCCCCCCTAGACAACCGATGACAACTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGGGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAAGCATTCCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTACAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTGAATCCGATCACACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3133571-3133972 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734720.1 Planktothrix prolifica NIVA-CYA 540 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3133571 36 100.0 37 .................................... ACCTTCTAAGGTTAGGATTTGTTGCAGTTCGGCTTCA 3133644 36 100.0 35 .................................... TGAACACTAAAAATTGGGGTCGGCGCGAGGGATGT 3133715 36 100.0 36 .................................... GTAACTGTGAGTTTAAGTTACTGATTTGATATTCTT 3133787 36 100.0 38 .................................... TAAAGGAAGTAGACCGTCTTGTTGAGCGGATATATCAG 3133861 36 100.0 39 .................................... AATCAATCTGGGATAAGGTAAACACTTGATTAGTTTGAA 3133936 36 88.9 0 ..............................C..TCG | C [3133966] ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 37 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTCTAAAATAAAAGCTAATAACTATAATAATCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTATATGTTGACTACTCTTTCAACTATTTGTTGACTTTACTAACTTCTAATTGCGATATCATATCTTGTATTTCATTATTTTATAATTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTACACTTTTAAGCCAATATTGGCTAAATACTTCTTACAATGAACTAGCGTTGAGCGATTGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATTAGATGCTATAGGTTTTTGCGAGGCTCAGGCAAAATGGCTGTAATGCCGATTCTGTTGTCGGGAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTCTGATTTAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCACTAAAAAAAAAGCCCAGTTTTACTGGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTCCTCGGGTGTTCCCTCCCCCCTAGCCCCCCGTGCACGGGGGGTTGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAGAGTCGGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTGAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGAAAAATAAGTTTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGCTCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCAGGATTTTCGGCTGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAGGTTCCGGTTTTCCCCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 5065592-5064380 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734720.1 Planktothrix prolifica NIVA-CYA 540 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 5065591 37 94.6 174 ................TG................... AAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGAGATCCTTTTCCCCTAGAACAGAGTGATCT 5065380 37 100.0 36 ..................................... CCCCTTGTATTCGTGAGTGCCGATTTATCCGTAACG 5065307 37 100.0 35 ..................................... TATGATTTGTTAAAACCTGAGTGTGTAAGTTTTGA 5065235 37 100.0 37 ..................................... GACAGATGTACCGTTGGGGTTTGATTGGTCTTATCAG 5065161 37 100.0 37 ..................................... TTTGCTCTTGCTATTCCTGCTGGTGCTAGTAGTCTCC 5065087 37 100.0 37 ..................................... TTAAGAATAATGAGTTAGTAGACTTAGAAGATAATAG 5065013 37 100.0 43 ..................................... ATCGAAAAAGCAGCGACCGCTAGAGTACCAAGAGCCGTGATTG 5064933 37 100.0 38 ..................................... AACTTTTAAACTCATCTAAGAGGACTCTCACTTGTTCC 5064858 37 100.0 37 ..................................... GGCTGGCGCGTGCTACAACTTCAGCCCCCTATAGTAA 5064784 37 100.0 36 ..................................... TGATAGCATTATTTTTGCCTCATTGTGTGCTTACTT 5064711 37 100.0 35 ..................................... CAAGGTGTCAACTTGGCAGTATTTCTTTCTCCTTC 5064639 37 100.0 42 ..................................... GGAACATTATAAAAAGTTAAGTGTAGATAAGGTATCTGCCAA 5064560 37 100.0 35 ..................................... GCAAGTTTTAATGTACTCAGATGATTTCAGTAGCT 5064488 37 100.0 35 ..................................... TTAGTGACTCTATAAAGCCTATATCTGGTAATGGT 5064416 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 15 37 99.6 47 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTCTTGTAAGGCTAATTCACAGGCGGCATAACCAATATTTCCACAGGCGGGGGCGTTTAAACCTGCGGCTTGAAAAATTGCGGTGGTGAGGGCGGTGGTTGTGGTTTTTCCGTTAGTTCCAGTAATACAAACCCAGGGCAAATGTCGCAGATTTCGCCAGGCTAATTCTAGTTCTCCGATGGTTTCTATACCTAAATTTCTGGCGGCTTTTAACCCCGGACTATCCCAAGGAACCCCAGGACTAACAACTATTAAATCTAGGGAAGTATCGGGTTGAAAATTATGTCCTAACTCGACTTTAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGGAAGAATTGCGATCGCTTAAAATCACATCCCATCTTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATAT # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATACCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCTCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGTTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTCGGAACTAACTGTA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.96, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA //