Array 1 40-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOG01000013.1 Capnocytophaga cynodegmi strain Ccy74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 40 47 100.0 30 ............................................... GAGTTAAATCATCATCACATTTTTGAATAT 117 47 100.0 30 ............................................... ATAATAATAATTATATCACCTTTTTGCACC 194 47 100.0 30 ............................................... TTGTATGTTGTTGTATAGGTATGGAGTTAC 271 47 100.0 30 ............................................... ATTTTCCCATTACATAAACAATTTCATTTT 348 47 100.0 30 ............................................... ATGTTCAAATTTCAAAAAATCTTAAAATGG 425 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACACACCTGGTACGACCATAAACTTATATCTAG # Right flank : CCTGAACGTATTTTGTACCTGCTGACCATTTATAATAAGTACTCCTTTTGTGGTAATGGTATTTTCTGAAAGGACAGAAAAAATGAGTTAATGAATATCCTTTTTTTTGTCGAGAAGTTTTTGACGTTCTCTCTTGAATTTTCTGTTGTTACGAACTTCAAATTCTATAATTATGTAAATAATCCACAACACAACAGCCCCTACAATAATATACCAATATTTAAATAGATACCATACGATACCTGTGAGCAGGGCAACAAAAACAATAATTACGCCCCAAATAAAACTTCCTAAACTATTAGAATTTTCCATAACTCAACTTTTTACATTATAAATTTACTTCCTTTTTTTATATAAAACCCAACGATAACCGTAGGAAATCAGTTCTTCAGTTGTAACCAGCCACAAAGTTACCAAAATTTGAAAGCTTATCACAACTATTTTTGTCAAATTATAAATACTTCATATCTTCGCATTGCTTTCAATGAAAATAATAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 168529-169807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOG01000003.1 Capnocytophaga cynodegmi strain Ccy74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 168529 47 100.0 30 ............................................... AGAACGCAAAGAACTTGCTCAGCTACTACG 168606 47 100.0 30 ............................................... GTCGGTGGCTTTGTTGCCTTTTTCAAGTTT 168683 47 100.0 30 ............................................... ACGACACGAGTAACAAAGTACTAAAATTTA 168760 47 100.0 30 ............................................... AGGTAGTAATGAGGTATGTTATGTTAAAAC 168837 47 100.0 30 ............................................... AGCATACGAAAAAGCCCCCCAAGGAAATTA 168914 47 100.0 30 ............................................... TATCCGTAAGAAGTCCCGTGAGTCTAAGCG 168991 47 100.0 30 ............................................... AATAGTCCTTTCCGTTCTCTTCCTCATTTA 169068 47 100.0 30 ............................................... TACCCAATTGTGTTCTGTTTGAAATCCAAA 169145 47 100.0 30 ............................................... AGAAAATAAAGAAATCCTGAGAATTCGTCT 169222 47 100.0 30 ............................................... ACAAATTCAATGTTTGCCTGTTCAAGTAGA 169299 47 100.0 30 ............................................... GGTTATGCCTGAGCCCTGTAATATTTTGGC 169376 47 100.0 30 ............................................... TGCAGGGCAATTGTGGGTTGTCGGTACGAA 169453 47 100.0 30 ............................................... ACCTTTTTATTTACTACTCCGAAGGCTTCT 169530 47 100.0 30 ............................................... GGATATACGGAAGCTCACGTCGGTTCTGTT 169607 47 100.0 30 ............................................... ATAAGATTTTTAGTATATACAATTGTTGCA 169684 47 100.0 30 ............................................... GTCTTTTTCATTTTCCAATGTCTGCATTTT 169761 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCCTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAGTAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGTCTGTCAGAGGATTATTTTTTGAG # Right flank : TTTAAAGATTGTATAAACTCAGAATAAAGAGTTGTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 3208-3772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOG01000028.1 Capnocytophaga cynodegmi strain Ccy74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3208 36 100.0 30 .................................... TCACACCTTTTTGAATAAAACTACTCCAGG 3274 36 97.2 31 ..................T................. TGATAGGTTTTTGGTCAGTAAAATAGCTCAG 3341 36 97.2 30 ..................T................. TGATAAAGCGGTGCTTCTAAAACTAATCCC 3407 36 100.0 30 .................................... TCAGTAATTCAGGCAAACTAACATCTTTTG 3473 36 100.0 30 .................................... ATGAGTTTAATTGACACAGAACATAAACGT 3539 36 100.0 30 .................................... TTTATTCAAAAAACAAAAGAAGCCACAGGT 3605 36 100.0 30 .................................... TTGATTATTAAGGATTAAACAAACATAAAT 3671 36 100.0 30 .................................... AAGTGTTATTTCTTTCTTTAGTGATGAGCA 3737 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : CATAGGTGCTAAAATAGGTGCTAATAGTTTTATATATAAATATAATTTGTATGTGTTTTTGGTTATGCAAATATAACTAAAATATTATAAATCAACATACTTATATAAAATAAAACATATCTATTTTAACATAGTTCACTTCCCTCTCTCTCCGCAATAAAGGGTGTAAATCGAGTAGTTGCGAGATTTGCACCCTTTTTTACACCCAAAAATATTGAATGATTTTTTATTCCTTCTTCATATTCTTCATATTTTTCCCACATTTATGGCTTTAATTTTTCAGATTGGCTCAGAACTAAACTTTTGAGTTAAAAACTTCAATTTACATCTTACTCAAAACACTAAAAATCAAATACTTACAAAAAAATTCTTGCTAATTTCCACACGTGTTGTCCCAATAATACAACCCAAAAATATAATTTGCAACACTTTTCACACAAAAACAGAAAAATAAAGACCTCCCGATAAAGTACATCGGGAGGTTTTGCGTTAAATACAAT # Right flank : CTGGCATCGGTTACGAGCGTGAACACGACGCCAATCAACACGCCAAAACGCTTGAAGATAAAAAAGTAACCAAGTTTGAAAGGTTTGTACAAGAACCAAGTGACAAGGACAAAAATCCAAGTGACAAGGACAAAAATCCAAGTGACAAGGACAAAAATCCAAGTGGCAAGGACAAAAATCCAAGTGGCAAGGACAAAAATCCAAGTGGCAAGGAGCAAGAAACAGGCGATAACGGAGGACAAACCAAAGACGAAGGTAATGACGAACTCAATGAGGGCGATGTGAATAAAGAGCCAAGTGACAAGGACAAAAATCCAAGTAACAAGGAGAAAAACAAGAAAAAGTAACCCGCAAAAGGCTTTAGGCAATACGCTTACGGCTTAAAGCCTTCTGCATAAAGCAACAAAAAAAATGGCAAAAGAAATTAGAACATTCGGGCTGAAAGCCTTACGTTTTGGAGCAGTCAAAGAAGACGGTACCGCTCCAAAAACTTCCGAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : GTTGTGATTACCCTCCAATATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOG01000062.1 Capnocytophaga cynodegmi strain Ccy74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2 47 100.0 30 ............................................... TTTAAAGATTGTATAAACTCAGAATAAAGA 79 47 100.0 30 ............................................... ACACCTGGTACGACCATAAACTTATATCTA 156 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : TG # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 394-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOG01000072.1 Capnocytophaga cynodegmi strain Ccy74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 393 47 100.0 30 ............................................... ATAATTTGTGTTTTTTTAATTCTGTTTGTA 316 47 100.0 30 ............................................... TGATTTTAATTCTGAATCTAAGGGTTCATC 239 47 100.0 30 ............................................... TATTTCTTTTTTGTTTTCTTTTGAAGATTT 162 47 100.0 30 ............................................... AGGAAAAGCATTTTTAAAAGATTTAGGTAT 85 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACACACCTGGTACGACCATAAACTTATATCT # Right flank : CTTTAAAGATTGTATAAACTCAGAATAAAGAGTTGTAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //