Array 1 1168788-1172722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWPG010000003.1 Lelliottia sp. WAP21 Scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1168788 28 100.0 33 ............................ GACAGGGGTATCAAACTGCGAAGACTGCATAAA 1168849 28 100.0 32 ............................ GCCAGATACCAGACACCTTCATCTTCCATCAG 1168909 28 100.0 32 ............................ AATGGCGCGGGTCATATGAATATCAATGCATT 1168969 28 100.0 32 ............................ AACGCAGACAGTAAAAATCACGGTCGGGCAGT 1169029 28 100.0 32 ............................ ATGTTTCGCCCGATCGCGGGATTTCAAAACCC 1169089 28 100.0 32 ............................ ACGTCATCGAACGTAAGCACAACAGGACGACC 1169149 28 100.0 32 ............................ CCAAAGCGGGCATGATGTGCTTTACAACAGCG 1169209 28 100.0 33 ............................ ATCATGGACCAGAACACCCGGCTAAAGCATGCC 1169270 28 100.0 32 ............................ GAGGCGGGTTTGTTGGTTATTTGGCGATTATT 1169330 28 100.0 32 ............................ ACCCTGCATACCGCCGTCAGCGGATTATTTAT 1169390 28 100.0 32 ............................ GTCATTCGAGTTAAAGGGTGGTAAGCAATGGA 1169450 28 100.0 32 ............................ CAACGGGGGTATCAAACTGCGAAGACTGCATA 1169510 28 100.0 32 ............................ AGCAAAATCTGGCGTCGGGATTGAGACCCCGG 1169570 28 100.0 32 ............................ GTGTCAAGGCGAGCCTCATCCAGCATTATCTT 1169630 28 100.0 32 ............................ GAACACCTCCACTCAATCAAGCTGGGCACAGC 1169690 28 100.0 32 ............................ TGATGGGTTTAAGGATTTATTGTGCTGATTTA 1169750 28 100.0 32 ............................ GAGGCCGCAATCACCGCCGAACCCTGCAACAC 1169810 28 100.0 32 ............................ TGGCTCAGTATCAAGTCCAAAGGTGTTTCCTT 1169870 28 100.0 33 ............................ GTCGGACGCTGCGTAACGTTCAGCGGCGGTTTA 1169931 28 100.0 32 ............................ CCGCGAACCTGATAAACCGGTACCCAATATCG 1169991 28 100.0 32 ............................ TGAACCAGTAGCTCTGTCTCGGTACCGAAATT 1170051 28 100.0 32 ............................ AGGCTGATTGAATACTTGTTAATGGCGTGAAC 1170111 28 100.0 32 ............................ CACTCCGTCACTGAGAAAAAAACTAATGATGA 1170171 28 100.0 32 ............................ AGCCACGCGGCCATACCCACAGAGATGGAAAT 1170231 28 100.0 32 ............................ TTTCCAGCCGCTATTAATGTTTCTTTATTCAT 1170291 28 100.0 32 ............................ GGCAGGTCACGTGCTTGTCGGTATCGAAGCGC 1170351 28 100.0 32 ............................ CAGCGAGCCGGAGCGGTTTTTTGTCACGATAA 1170411 28 100.0 32 ............................ CGAACAACACCTCCACAAATAACCGCGTCAAC 1170471 28 100.0 32 ............................ ACTGACCGAAATCGAGATGATTGCCGCCATGG 1170531 28 100.0 32 ............................ TGGTTGATCGCTGGCGCGAGTTGGAAGAAACG 1170591 28 100.0 32 ............................ CACGGCAGCATTGCTTTGGTTAGGTAGTTATC 1170651 28 100.0 32 ............................ GGTAACAAGCGTTAACGGCGAGGTTGGGGCTG 1170711 28 100.0 32 ............................ TGTGCGACCAGGTCAGGGTTAATCAGCGCCAA 1170771 28 100.0 32 ............................ CCGGACTGCCGTCACTTCTCGAAAGCCAAAGG 1170831 28 100.0 32 ............................ GTACACGTCAGCAAGCTCCCCGGTGTCTAACA 1170891 28 100.0 32 ............................ TCTCGTGCTGACGATACGTCTTCCCCGCAGAA 1170951 28 100.0 32 ............................ TCGAAGAAATCTCTCTGAGGCTTATCGTGAAT 1171011 28 100.0 32 ............................ ACCTTGCACCGATTAAGGCGAGGGCTTGAGGT 1171071 28 100.0 32 ............................ AGGCAATTAAACGCAACGATGCTGAATATGCG 1171131 28 100.0 32 ............................ TAGCGGCAAACGTGCAGGTAACGACCCGGAAC 1171191 28 100.0 32 ............................ AACATCTGAATGTGCGGGTAAATGCATTGATA 1171251 28 100.0 32 ............................ GCTCAAGAATGGACAGGCTGGAAAAGAAACGG 1171311 28 100.0 33 ............................ AGCGCATTGCGCAGGCGATGGCTAACGTGCGCC 1171372 28 100.0 32 ............................ TGCATAGAAACTGCTCATTTTCGAATTATGAG 1171432 28 100.0 33 ............................ TCTTTGAATGCGCTCTGGACCACTGCCAACTCC 1171493 28 100.0 33 ............................ ATGCCGACACACCGCGGAAACCCTTTAACTCAA 1171554 28 100.0 32 ............................ CACTGCGGGAGCCTCATTGAATAATGGGATTT 1171614 28 100.0 32 ............................ GCCTGCAGGCCCTGGCCGACCTACGCAATCTG 1171674 28 100.0 32 ............................ AGCTCCATCATGCTGATGATAGCCATTCGTTT 1171734 28 100.0 32 ............................ ATGATGCTTTCCGGGTTATTGTTTATGTAATG 1171794 28 100.0 32 ............................ GGAAGACACCGGGGTTAGCTATTTAATTATTT 1171854 28 100.0 32 ............................ GCATGCCACCGCCAGTACAGCTCCCGGAAGAC 1171914 28 100.0 32 ............................ GACACATCGGAACTGAAGCTGGCGAACCTAAT 1171974 28 100.0 33 ............................ GCAAAGCTGAATTGGCGAAACCCATAGCGTGGT 1172035 28 100.0 32 ............................ CATGCCTACAGAGATTGAAATGCCGTTAATTT 1172095 28 100.0 32 ............................ ACTGGAAGGATGAAAAATCCGGGCATGGCCGT 1172155 28 100.0 32 ............................ AGGAGAGCATCAGTGATTAAAGAATCAATATC 1172215 28 100.0 32 ............................ ATTCATGCGCCGTAACCTCTTTGTATCAGGGC 1172275 28 100.0 32 ............................ GGTATTGATGTCCGATCAGCGCACTCGTGAAT 1172335 28 100.0 32 ............................ GCTCCAGCCGTCTCCCACTACTCGATGGTCTT 1172395 28 100.0 32 ............................ GTGGGCCGCTGAAATCCTCGTAGAGTGCGATC 1172455 28 100.0 32 ............................ GGCAGAACGGAAGCGGCGCAGGGCTCGCCAGT 1172515 28 100.0 32 ............................ CAGACATCTGACACAAAGATAGCTTGCTCCAG 1172575 28 100.0 32 ............................ ATGGAGATTGTCGATGCCGGTTCTGATGAAGC 1172635 28 100.0 32 ............................ TGAGCGATTCGAGCAGGCTGGCATTATCACAA 1172695 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTCACTCTCATCCGGTGTCAGTGTTCTGCCAGCACTTTTACGCCGCGCAACGTTGCGTTCATTAATACCCGTGACGCGTAAAATGTCGGCTTTGGACATTTCAGTCCATTCATGAATATTGTCCAGAACGCTTACGGGCAGCCCCTGACTGAGCATCTCAATCAGCTTCATTCCCCGACTGGCAGGCAAACCGGCGTACCGCCAGAGCGCATCACCTGTCGGTTTCTGTGCAGGGATCCAGGTTCTCATAGTATCTCCTCGGGTTATGACAATTGTCATGGGTAATTATAGTCATTTGTCAGTTTCGTGGGAATGAATTTCTGTGGGTGTTTTAATCATCGGAAGAAATGGAGAGGAATGCTGGCGTGACCCTAATTTTAAAGGTGTTTTTAAGTTATTGATATTTAATTAAAATAAATTATGTGTTGGAAAAAGGGTTAAAACTGCCTGAAGTTGCTTTTTTGCTCAGAAAACAGAGAGATGTGGTGATAGTATTTCA # Right flank : AAACGCCGTACGCAACCTGATTATCTAAGCAATCATCATTTTTGCACGGTTTTTTTGAGGTCCGGATATCGTATTCCGTTGTCAGCGTTCGCCAGATTGTTGACGGATTTTCCCGCGGATGCGTGCCGGATGATCTGCAGAGCTTGGCCTTTAATGGTTGAGCTCAGCTGATGATTTCCGTTTTTTCGCGACGGCGAATGATAAGACCTGCCGGCCCGGATTCTCGGTAGCATGTAATCATACGGGTACACTGACGCCTGGTGAGTTCAGCAGACTGCGCTAACTCTGCCAGCTAAATCTCTCAAGCCAGGTTGGCTTTAATAAAATCCAGAGGCAGCACTTCCTGTAGCGTCAGCCATACTGCAGTGTTGCTGTACATTTCTCCCTTCATCAACGCCGCCATCTATTTCAGGTACTCAGATGAGAAAAGGGGTTAGCGACTCAGGCTGGCGATACAATTTTGTGGGCTAGCCAGTACCGGATTAATTGCACTGAGCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1936779-1936389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWPG010000003.1 Lelliottia sp. WAP21 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1936778 28 100.0 32 ............................ ATCATCGCGTCCTGCTGCTGCATGATCCCATA 1936718 28 100.0 33 ............................ CACGTACCGAAGTTTAGCCACGTCGCCGGGTTT 1936657 28 100.0 32 ............................ TTTGATTTGCCATTGTTCTCAACTGGGACGCA 1936597 28 96.4 32 ..G......................... CCGCAAGGGGCTTAAACAAAATGGAAAAACAA 1936537 28 96.4 32 ..G......................... ATTTGCATATTTATATTAAAACTGTTGATAAG 1936477 28 96.4 32 ............G............... CGCCCAATGAGCAACATCGACAAACACGCATC 1936417 28 89.3 0 ..G...................C.A... | T [1936391] ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCATAAACCGGAGGCGGCACACTAAGGTATAAAGTGTGTGACTCTAAAAGCCGGGTTTTTTAACTCGGCTTTTTTATGCGCGTCATTCAGGAGAAATCGCCCGTCTGATTATATTCCCTCTTCTTTTGGGAGAGGGAATCAGGCCGCACCATCTCATTCCCTCTCCTTTTGGGAGAGGGGATCAGGCCGCACCATCTCATTCCCTCTCCCTTTGGGAGAGGGGTAGGGTGAAGGAAAAAGACCGCACGACCTTCTCCTCGCAGGCAATTATTCACGCCATGGCTGATGAATTTACTGCCCCTCATACTCGGATTCACAGTATCGATTTCAACGGTCTCCAGGTTCAATAACCCCAAGCCTGATTGCAGACCCTTTTTTTTGGCATTAATCTAAGTTATTGATTTTTATAATTGTAAATAACCGCCGAGAAAAAAGGGTTAAAGGAGGGGCATGTTGATTATTTTATTCCGGAACAATAAGATAGCGACGCAGCGCCTCA # Right flank : AAACCCTGCCATCCTGATTCACATTCTCTGTCATTCTGGCGCCTAAAAATTACACAATCCTGACCCAGAATATACCGCAGAAATCATTCCCTGGCCGTTTGCCGCACGCCATTCATTGAATTCTATTAATCAGCTAACGAATCAAATAAATAAGGCCGGGAATTATCCCGGCCTTGTTTAAATATTCATCTGCCTTTACAGGCGAAAGCGATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATGTAGTTTTTACGCATTTTACCGGAGATATGCGCGGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //