Array 1 43273-44338 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJY01000138.1 Escherichia coli strain HH-NP014 sequence138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43273 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 43334 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 43395 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 43456 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 43517 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 43578 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 43639 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 43700 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 43761 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 43822 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43883 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 43944 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 44005 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 44066 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44127 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44188 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44249 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44310 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51398-52267 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJY01000014.1 Escherichia coli strain HH-NP014 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51398 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 51458 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 51518 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 51578 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 51638 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 51698 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 51758 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 51818 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 51878 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 51938 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 51998 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 52058 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 52118 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 52178 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 52238 28 85.7 0 ....................A...C.CT | T,C [52258,52262] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58279-58786 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJY01000014.1 Escherichia coli strain HH-NP014 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58279 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 58339 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 58399 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 58459 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 58519 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 58579 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 58639 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 58699 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 58759 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCGCGTTCACTGCCGTACAGGCAGCTTAGAAATCTAATATTTCAAAACCCCAACGACTGCCAATGTTCACTGCCGTACAGGCAGCTTAGAAAACAGGCACCCGGCTGATGTTCGTAGGCGACATGTTCACTGCCGTACAGGCAGCTTAGAAACACATTATGAATCACACGATGGCGATGCGTGAGTTCACTGCCGTACAGGCAGCTTAGAAAATCACATTTAATTCCGTGTTTCGTTTTGAACAGTTCACTGCCGTACAGGCAGCTTAGAAAGAACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCACCCCGAGCGTGAT # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40486-39481 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJY01000037.1 Escherichia coli strain HH-NP014 sequence037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40485 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 40424 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 40363 29 100.0 32 ............................. ACGCATTCGAACTGGGCGACATAGAGCCAGGC 40302 29 100.0 32 ............................. GGCGCTGCAAAATGGGGTGGAAGAGCGGCGCT 40241 29 100.0 32 ............................. CCGCCAGCATATTGCGCTGCTCGATTGGGGGT 40180 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 40119 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 40058 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 39997 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 39936 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 39875 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 39814 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39753 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39692 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 39631 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39570 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39509 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //