Array 1 1361215-1361492 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVV01000013.1 Bacteroides ndongoniae strain Marseille-P3108T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1361215 47 76.6 30 .C....G........TT..............G.....TGGAG...A. AATCGGCATTCAGGTAGCCCAAGCCGAGGT 1361292 47 100.0 30 ............................................... TATTGGTTGCTTTCAACACTACAAAGATAC 1361369 47 100.0 30 ............................................... TAGCCTATTCGCTGATACAGGTCGTACGGA 1361446 47 72.3 0 ..........................A....TTGT.ATC..GTAG.T | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 87.2 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATAAAGAACAGC # Left flank : GAAAACTAATCTCTTTTGTTTTTTTAGTTGAAATTGGGGTAGTAAAATTGTTTCGAATTAGTATTTTTGGATTATAAAGAACAGCTGTCTGAATATTCTTCCAGATGAATGAAATTAGTTATATTTAAACTTTATCAAACATTAGATATTGAGCATGGAAAAAAATAATTATTTACCTTTCTGTAGGTATTATAAAGGTGAGGAAGAGAACCCTTACAAAAATGGGGATAAAAATCTATTTTGGTTTTATGAAGAGAAATGGATTGCGTTAAGCATTAATAAAGATGATATTCTTGGTGATATGCTTGATGAATATATTTCTGCTGGGCTTTCTGAGTTTAACATGATGGATGATACACCGATCACACTAAAAGCTCTTTTATTTAATCGTTATTGTCACTGGTATGGCGGATATGGATTAATCGAAGATGCAAAAGCTTTTAAAAAGTTTTATTTGAACAGTTATACGAAAGAGGTGTAATCGTCTCTTTCCTTTTGTT # Right flank : TTTTATTTGACTATCAACAGATTGGATAAAACTCGCACGAGAACGGGCAATGGATAAGAAAAAGCCGGACTGTTCCGAACCGCCATATTTCTCATGCTTTCAAATAACTCTTTATCTCACTTGCAAAGATAACATTTCTTTCTGAAAAGGCCATATAAACGGCTGCAATCTTACGGAATAAAAACATATCGGGAAAACGAGCATACCGTAGCCGAGTCCCCATAACCACAGGCAAAGGTAATTCGTGTTCTTCCCGTACAAGCAAGGCCAAGCCCTTCGGGTTCGTGGAAAAAATCATCCTCGCCCCGGAGGGCTTGCGGTATTTTTTCCCGAAGCCTTGCATGTACGGAACACGACCTTTTTAAGCCTGTAGTTATGGGAACTCCGGCCCCAGAAGCCGGACTAACAAAAAATCAAATGTTATGTTACAGGCAACAAAGAACAAGTACACGGTGGAAACACTCAAGCCACTGAACATTCTGTACGATCACAAGCACTGG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATAAAGAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1454450-1454019 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVV01000013.1 Bacteroides ndongoniae strain Marseille-P3108T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1454449 47 100.0 29 ............................................... ATTGTGTCTAAATTAGGGGTGGGGTATTG 1454373 47 100.0 30 ............................................... GATAGGACTAATTCATCCCTGTACTTGTAA 1454296 47 100.0 30 ............................................... ACGTATTCGTTCGCGTATAACAGACTTTAT 1454219 47 100.0 30 ............................................... TCAGAAGAGCGAAGCATGATTTCACCAGAT 1454142 47 100.0 30 ............................................... AGGGTTTAGAATGATACTCGAAAATCCTTC 1454065 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GCTGTTCTTTATGGTTCAAAGATACTAATTTGAAAGCAAATCACAAC # Left flank : CATCCTTATATAAATGCTTTGCAGGGGAATTAAGACGTATCCAATATCCCGAAGAAGATTAATGGAACGCTTTAGCGAATATAGAGTAATGTGGGTATTAGTATTTTTTGACTTACCAACGGATACAAAGAAAGAGAGAAAAGCAGCGTCCGATTTCAGAAAAATGCTTCAGCGTGATGGGTTCACCATGTTTCAGTTCTCCATTTATGTCCGACATTGTGCCAGTAGCGAAAATGCCGATGTACATATTAAAAGAGTCCAATCCTTTCTTCCTCAATTAGGTCAGGTGGGTATCTTATGTATTACAGATAAACAGTTTTCCCAAATTAAGATTTTTTATGGGAAAAAGACTGTAGAGCCTAATGCTCCAGGACAGCAATTAGAGCTATTCTAAAAAAGTAAATCCTACTATTTGTAGGATTTACTTCAAAGAAACAGCATTTTTACAAATTCTAGCTATACTCATAAATCCCTGATTTACTAGTCGTTGCATACATTGA # Right flank : ATACTCTTGATTGTTCCGTCCGCTTCCGTTGCTGTTCTTTATGGTTCAAAGATACTAAAACTCGCCCACATACGGATCGATTTTGGAGAAATAATGCAAACTGTTGGAAATGAAAGGTGATGTGCGGTTGTATTCCGTATCCGTCATTGGGGCACATTTGCCATTTTTTGAGGGGTTAAGAAAATAAATCGCTACCTATCCGTTGCCTTTTTCAGATTGGGAAAACCGTGCGAAACGGGCTTCCGATTCCTCTGTCATATCACCGTAAAGAACGCTGTTCCTGCATATTTTGCGTTAGCGAAGATAGCCATTTTTTCGCAAAGCAGAAAAAATACGGGCCGGTTCTTTCGAGCATGGGACTTGTTTCCATATTCTGCCATATTCGTCATGCCTTTCATTTGGCTTTTATCCGGTAATTTTGCAACGAAAGGAAAAGAGTATGAATCAGACGAATGTAAAGGTTTCGTTCTACCTGAAAAAGAGCGAGGCGGATGCTGACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTCTTTATGGTTCAAAGATACTAATTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //