Array 1 349551-349801 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIES01000010.1 Staphylococcus aureus subsp. aureus CIG290 strain StaphylococcusaureusCIG290 PSABG_20_CIG290.contig.26_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 349551 36 100.0 35 .................................... ATATATTATTTTTTATTTGTGATATGCCGATTAGT 349622 36 100.0 36 .................................... AGAAAGACAGTTGTTATCTAACCTAAGGTATTAACG 349694 36 97.2 35 ...A................................ TTCTAAATGGTTATATTTATCTAATGCATCGTATT 349765 36 91.7 0 .................................TGT | A [349795] ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 97.2 35 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCCAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : TAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGGATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 358518-358844 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIES01000010.1 Staphylococcus aureus subsp. aureus CIG290 strain StaphylococcusaureusCIG290 PSABG_20_CIG290.contig.26_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ================================= ================== 358518 40 100.0 30 ........................................ GTTTTTTACTACATCTATTATATTACAGTA 358588 40 100.0 32 ........................................ AATAATTACTGCAAGTGATTGTAATACTGGTT 358660 40 97.5 33 ..A..................................... GTCATATCTTATCAATCCCTTTTATTTTTTATT 358733 40 97.5 32 .G...................................... GCCCACTTAATTAATTCATCTAGTCTCATTTC 358805 40 95.0 0 .T.............T........................ | ========== ====== ====== ====== ======================================== ================================= ================== 5 40 98.0 32 TCTATTCGATAACTACCCCGAAGAAGAGGGGACGAGAACT # Left flank : ATGTAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTA # Right flank : TTAAAGATTTAAACAATAGCGTCCCATATTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAACACCTAGAGATAATTTTATTGAGGTGAACAACAATGAAATTATCTTTAGACATAAATACTGATTTTGAAGTTACTACTCTTACAGATTTACCAAAATTAAAAATTGTTATGGAGAACTTAAACATGAAAATAAACAAAAGTGAAATAGCAAGACACATGGGTGTTGATAGAAGAACAGTTGATAAATATTTAAATGGCTTTGAGCCAACCAAAAAGAGAAATCGTCAGTCTATTATTGACAAGTATTACCCTATCATCGAAAAATTACTTTCATACTCTAGTGAACAAAAGTTCTACTATAAGCGTATTCTTTGGCAATATTTGAAGGATAAACATGGGTTAACGTGTGCCTATTCTACATTTAGAGCTTATATCCTTAAACATGATGAGTTTAATCGTTATTTTATGAAAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTATTCGATAACTACCCCGAAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //