Array 1 33-1321 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVST01000106.1 Acinetobacter baumannii EGD-HP18 contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 33 29 100.0 31 ............................. GTACCTATTCTCTATGGACGTCGTGAAGTTG 93 29 100.0 31 ............................. CCCGTTGGGATGGCTCTGTAACTTTCGGGAA 153 29 96.6 31 ............................G AAGATACAAGGAATACCAGCGACTTTGAATT 213 29 100.0 31 ............................. TTCGCGTAAGTAAAACAGATGTATTTTGGTA 273 29 96.6 31 ............................C ATATCGTTGTCAATGCGGTGGCCTGCTGCTT 333 29 100.0 31 ............................. TAACACGCTCTTGCATGTCTAGCATCTTTTC 393 29 100.0 31 ............................. AACTAATCTTACTGATAAGCGCACAGTAGAT 453 29 96.6 31 ............................T AAAAAAGATTATATTAAGTTTTATTTCAAAC 513 29 96.6 31 ............................T AATTCTTGGGTGGTTCTGGTAGTGGCATCCA 573 29 100.0 31 ............................. ATGTAAATTCCGTCACCTGTCATGTCTTCTA 633 29 100.0 31 ............................. GTAACCAAAATTATCATTTTATAAACTCCAA 693 29 96.6 31 ............................T CTCGAGAGCTAGCAGAGAACGAGTTTTTATT 753 29 100.0 31 ............................. GTCTGGCAACTGCTGTGAAAAGTCGATTTCT 813 29 100.0 31 ............................. ATCTGTTATCAAGCCTGGTAGCCAAGTTGCT 873 29 96.6 31 ............................C TTGTAACATAAGCAAGAAGGCGAAACTAGAT 933 29 96.6 31 ............................T AGACAAATTGATAGATCAAAGCATTGCGCGA 993 29 100.0 31 ............................. ATGCAGCTTTTCGAAAAGTTCATTGTGTTCA 1053 29 96.6 31 ............................C GCAGATTTACGGATGCCTGTAACTGTCATAA 1113 29 96.6 31 ............................C TTAGTTGTGGCGGCGCGTCAATTGGCTCGTA 1173 29 100.0 31 ............................. TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 1233 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 1293 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 22 29 98.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TCCAGTAGATAATTACAAATCACCTGAACCTCG # Right flank : GTTGCATGGGGTATAAAAGTTACATCTAGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-809 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVST01000019.1 Acinetobacter baumannii EGD-HP18 contig115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 100.0 31 ............................. ATTAGGCACAAGACAGGAATCGGAAGCCCTA 61 29 100.0 31 ............................. AACAGCTCGACGCGCAATATGAGTTACATGC 121 29 100.0 31 ............................. AATTGGTATGAAGAGCCAGTTTCGCAGTTCA 181 29 96.6 31 ............................T AAGCCTAAATTTCCGTTTGCTCCGGCAGACA 241 29 96.6 31 ............................T TTGATGCGGCACCTGAGTCAGAATTACTGGT 301 29 100.0 31 ............................. CAACTGGCTCGACATGTTGATCAATCATATC 361 29 96.6 31 ............................T AGCACATTAAATATAGTTTTTGATAATCAAT 421 29 96.6 31 ............................T TCAGGGATTTCAAAAGCTAAGCCGGTTCCAA 481 29 100.0 31 ............................. GATGTCGTAGAAATTCTTTTGAATCCTGATC 541 29 100.0 31 ............................. GCATAGTGAGCTATTGCAGCCGCTTTAGAGT 601 29 96.6 31 ............................T GCAAATAATCGCGTAAAATATTATCCGGACC 661 29 100.0 31 ............................. ATTGGAGTAATTAAATCGCCTAGATCAGAAG 721 29 100.0 31 ............................. CAGTATCACTGGCACGATTTATGTAATTAAA 781 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 14 29 98.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1021-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVST01000116.1 Acinetobacter baumannii EGD-HP18 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1020 29 96.6 31 ............................C TAAACGTTTACCACTTGCAGTTGTTGTTACT 960 29 100.0 31 ............................. ACAAGGCCAATTGGCGTGATTAAATCGCTTA 900 29 96.6 31 ............................C AAAACACCCAACAAAGCGGTGCCGAGAACAT 840 29 96.6 31 ............................A AGCAGAACAGGCCGCTAAAGCACTTGCGGAT 780 29 100.0 31 ............................. CTTTACCATCAGCCGTTTTGCCTGACTTACC 720 29 100.0 31 ............................. CGCTCGGAAATGGCAGACGCTTATACAATAT 660 29 96.6 31 ............................G TGATTTTTGTGTTTGCTCTGATCGGTAAAGT 600 29 96.6 31 ............................A GATGGCACTACCAGAGCTACTGATTTAGATC 540 29 100.0 31 ............................. GAACGTCAGATCTTTGCTGACATCGAGGGGC 480 29 100.0 31 ............................. TCAATTATTTATTCAAAAGATAACTGGTTCT 420 29 96.6 31 ............................A ATAACGAAACCGATAGAAAGCTTTAATTTGA 360 29 96.6 31 ............................A GCACGCCCATAATAAGAAAGGTAACCATTTC 300 29 100.0 31 ............................. TACTTTCCGCTTTAGTGAACTTCACCTCTAC 240 29 96.6 31 ............................A AGGGGGAAATTTAAGAGCGAGAAAAACAGAA 180 29 100.0 31 ............................. AGTCGCCATGTTCAAGAATATCCAACTATTC 120 29 96.6 31 ............................A ATCGATTTTGAGGGTTTGAAAATCCCAGTTC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 17 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TCTAAATACTTAGATGGATTGTTTAAATTACT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6573-7502 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVST01000116.1 Acinetobacter baumannii EGD-HP18 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6573 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [6575,6579] 6635 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 6695 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 6755 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 6815 28 96.4 32 ...A........................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 6875 28 100.0 32 ............................ ATCAAAAGCTTGGTGAAGAGCATGGTGCACTA 6935 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 6995 28 96.4 32 ...A........................ AGAACAGTTTATTCGCGAATTCGGGGTGGAGA 7055 28 96.4 33 ...A........................ CAACCGGCTAAGCTGCATGTTCTTGAGGCGCTG 7116 28 100.0 32 ............................ GATAACGAACACACGGCGGCGTCGTTGTGGAA 7176 28 100.0 32 ............................ ATACAGGACGGCTGGCAAGTGGACGGGCATGA 7236 28 100.0 32 ............................ AGTGGGATTGTTGCAAAAAGGATTCGCTTTCT 7296 28 100.0 32 ............................ ACGAAACTAAGCGGCTCATTACCGGCGATAAC 7356 28 100.0 32 ............................ TTGATAATACGACCTATGAAATGATTGGTACT 7416 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 7475 27 78.6 0 A..T........TC........C.-... | A [7479] ========== ====== ====== ====== ============================ ================================= ================== 16 28 95.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTATTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCATTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCAGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGGGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-600 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVST01000066.1 Acinetobacter baumannii EGD-HP18 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 32 29 96.6 31 ............................A ATATTGTTATTCAATCACCGTAATAAGAAGG 92 29 100.0 31 ............................. ATCAATTAGGCACAAGAGAAGAATCGGAAGT 152 29 100.0 31 ............................. TATCCTGGTAAAACAAGCCCATATCTTGAAC 212 29 100.0 31 ............................. GGTGAATATATTATTAATATGGGCCATTATC 272 29 96.6 31 ............................A ATTGGAGTAATTAAATCGCCTAGATCAGAAG 332 29 100.0 31 ............................. GAATTCTCTCATCTGGCAAAGACATTAAACT 392 29 96.6 31 ............................C TGATTTATACCACGTTTACGCACTTTAGCTT 452 29 100.0 31 ............................. TGAATCGTGGAAATTAATAACACCATGTAAA 512 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTGTTG 572 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TCTGCTGTAGTCGTACTAACCACGCTACCGTG # Right flank : TTTGAATCTTAAAAATAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGAACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //