Array 1 880297-879403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007204.1 Riemerella anatipestifer Yb2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 880296 47 95.7 30 ........C...............A...................... GTGCTCATCGGCGAAGACACCGCGGCACCC 880219 47 95.7 30 ........C...............A...................... TTTCGGTTGCTATCCGAAACGATTCGGATC 880142 47 95.7 30 ........C...............A...................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 880065 47 95.7 30 ........C...............A...................... TACTTCGTTTATTAGTTTTATTGCAATGTT 879988 47 95.7 30 ........C...............A...................... TAGATACATCTCTTTATCTTCGTGTAAAAT 879911 47 100.0 30 ............................................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 879834 47 100.0 30 ............................................... TAATGGAGATTATAATATCCAGATACAAAC 879757 47 100.0 30 ............................................... TCTATCGAAGTGTTTAAAAACACTTGATTT 879680 47 100.0 30 ............................................... GATATAGTATCAGATGAACCGACAACGGAC 879603 47 100.0 30 ............................................... TGATTGACTCTATTTTCTCCTGTGCAGATA 879526 47 100.0 30 ............................................... TTATTAAAAGTTTTCCGATACTTCCTATGT 879449 47 93.6 0 ........C..................................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 97.7 30 GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //