Array 1 251171-249676 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEC02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0017 NODE_3_length_414563_cov_11.453481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251170 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 251109 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 251047 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 250986 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 250925 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 250864 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 250803 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 250742 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 250681 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 250620 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 250559 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 250498 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 250437 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 250376 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 250315 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250254 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 250193 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 250132 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 250071 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 250010 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 249949 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 249888 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 249827 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 249766 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 249705 29 93.1 0 A...........T................ | A [249678] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 268449-267811 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEC02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0017 NODE_3_length_414563_cov_11.453481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268448 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 268387 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 268326 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 268265 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 268204 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 268143 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 268082 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 268021 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 267960 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 267899 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 267838 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //