Array 1 2528-3669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNJ010000034.1 Clostridium perfringens strain CP-04 34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2528 29 100.0 37 ............................. AGTTTGGAAGAGAAGATGGCACAGTAGGAACAGGAGC 2594 29 100.0 36 ............................. CAAATAAAACGAAAATCTACAAATCTAAAAACGTAA 2659 29 100.0 35 ............................. AAAATTCCATCGAACGGTTTACTATCAGTACCATC 2723 29 100.0 37 ............................. TTGGGAACTAACTATATAGAAGATTTCACATATCTTT 2789 29 100.0 37 ............................. CGACAAAGAATAACTTTATAACGAGCATAACTAAGTG 2855 29 100.0 36 ............................. GTGTTTTCGCATGGGATGAGGTTCAAAATGAATTTA 2920 29 100.0 37 ............................. ACTACATACATATATAGCAATGGGATTATCCACTATG 2986 29 100.0 37 ............................. AAAGTTTCTGTAACAGTTAATAATCCATTTTGAATCC 3052 29 100.0 36 ............................. ATGATATTATCTCATCATTTTGGTTATTATGGATTA 3117 29 100.0 36 ............................. ATATTTTGTTGAATCTTTTGGATCAGGTTGAAGATA 3182 29 100.0 37 ............................. CTTATAGCTAATGCTAATAAGTTGAAGGCTCCGACTA 3248 29 100.0 36 ............................. ATTGTTTTTATATAGTTATAATAATAACGTGAATTA 3313 29 100.0 37 ............................. ATGGAATATATAGAAAGACTTTCAAATGGAGAATTGC 3379 29 100.0 37 ............................. AGATTTGACTTTTGATGATGAATTAAATTATATGCAA 3445 29 96.6 36 .......A..................... CTAGAAAAACCACCGTTACCACTTACCAACAATTTA 3510 29 96.6 36 .......A..................... TGATATTCTAAAGCTTGATTACTTTTAAGTCCATTT 3575 29 96.6 37 .......A..................... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 3641 29 79.3 0 .......A....T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 98.3 37 GTTTTATCTTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTGGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTCTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //