Array 1 1484213-1486941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022371.1 Providencia rettgeri strain BML2496 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1484213 28 100.0 32 ............................ CAATAACGGTTTTGATAATGGTTTTAACCGTT 1484273 28 100.0 32 ............................ TATAACGGTAAGCTTCATGCTTATATTAGAAA 1484333 28 100.0 32 ............................ TTGAAGATAGTGAAGGAGCCTATAACGGTAAG 1484393 28 100.0 32 ............................ ACCTGTAGGAATGTATTCAAGCGTGTAAACAC 1484453 28 100.0 32 ............................ AGTTCATAGTAGAGTCAGAAAATGAACCCAGT 1484513 28 100.0 32 ............................ GTCTAAAATTGCTGCGCGTTCTTCATCTGAGT 1484573 28 100.0 32 ............................ GTGCTAGAAATCCACCAGCAATTTTAAGAATA 1484633 28 100.0 32 ............................ TTATTAAAATACTCGATGATGTTAGAGAACAT 1484693 28 100.0 32 ............................ CAAATCGTATTCTACGACGGTTCTTGGTACAT 1484753 28 100.0 32 ............................ GTAAACACAAACGGAAGTGACTATGCTGAGTA 1484813 28 100.0 32 ............................ GGTGATTTTAGTAAGCCACAATTAAATAAAGC 1484873 28 100.0 32 ............................ CAACTAATTCCGCGCCGTCACCTTCTTTTAAC 1484933 28 100.0 32 ............................ TTTATAGATTTGAAAGATGTCATTCTTCCTTA 1484993 28 100.0 32 ............................ TCGGTATATGTACCAAGAACCGTCGTAGAATA 1485053 28 100.0 32 ............................ TGATAGTTTGGTTTGGGGTAATGGATCTGTGT 1485113 28 100.0 32 ............................ CAGTGATAAGCGTGGACAAGCGCAAGCAAACT 1485173 28 100.0 32 ............................ TCTTGATGCAAACACATAATCCCCTGGGGTAG 1485233 28 100.0 32 ............................ ACATGGGGAAAGTGTAGAGAGAAATTTAGTAA 1485293 28 100.0 32 ............................ AAGAACTCTATGAGTTAACGGGTTATGCTAAA 1485353 28 100.0 32 ............................ ACCGCAAGCGCTATTTGTGATACTAACTCCTT 1485413 28 100.0 32 ............................ TAATCACTTGTGCCGAATTGACCAGGTATTAA 1485473 28 100.0 32 ............................ TCTCATGAATTGCAGGACAATTACCCCTAGCT 1485533 28 100.0 32 ............................ ATTTCATCATCGCTATAAACGCTTTGCGACTC 1485593 28 100.0 32 ............................ ACTATAGTTTGTCTGTTGTGCAGTTGCTGTAA 1485653 28 100.0 32 ............................ TTGATGGTAGTGATGGTGCGTATAACGGTAAA 1485713 28 100.0 32 ............................ TGATAGTGTTGAGTCACGCTCTTGAACTACAA 1485773 28 100.0 32 ............................ GTAAATCTTACCCGAACGTCAATGCAGCAAAT 1485833 28 100.0 33 ............................ AATATACAGTTGAGCTTTTGAGTCCCCTTTTAT 1485894 28 100.0 32 ............................ AAATTGCCATTTTTCAGCGTCGTATCTCTACA 1485954 28 100.0 32 ............................ TCCTCACGATTCACGCCGAAATGAGCACGTGC 1486014 28 100.0 32 ............................ ACTATCGAAGAAATCACACTCTTCATATGCGA 1486074 28 100.0 32 ............................ AGCACCTGTGACTTCAATCGTTGGATTATATC 1486134 28 100.0 32 ............................ CGATGAAAGAAATCATCACGAATGCGCTGAAG 1486194 28 100.0 32 ............................ TGTAGCATTTATCACACAGGAAGCAGCAAACA 1486254 28 100.0 32 ............................ TTCAGCGCCAAGCTCACGAGAAACCCCGCATT 1486314 28 100.0 32 ............................ CACTTAGAACCGTAACCTCGCTCATGTCGGCT 1486374 28 100.0 32 ............................ AATATATTCATCCTCTATTTTCCCAAACCTTA 1486434 28 100.0 32 ............................ TTTATTCACAGCATTGGATGCTGAATTCGGTT 1486494 28 100.0 32 ............................ TTCACCGCATTTATGCTCATCGAAAGCACAAT 1486554 28 100.0 32 ............................ ATTGCCGCTGAAGCTAATTTATCAACGTTTAA 1486614 28 100.0 32 ............................ GTAGATTCGGAATGCAAGATTTGGACAGTGAC 1486674 28 100.0 32 ............................ TATTAGCGGATTATTCGAGTTCAATACCATCT 1486734 28 100.0 32 ............................ AGCCCAACGAGCACCATCAGTATCAACAAAAT 1486794 28 100.0 32 ............................ ATTGATGGCTCATGCGGCTTGCCCCACTACCA 1486854 28 100.0 32 ............................ AACAGGGGGCGGTAAATAATGGCCAAAGTTAA 1486914 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGCTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCGGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGATTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAAGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTACTTGTTTTATTCTGTTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGACCACAAAGATGGTATTAAAAGAGCATTAGTGAGTGTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATTGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCCCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1495637-1497647 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022371.1 Providencia rettgeri strain BML2496 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1495637 28 100.0 32 ............................ TACTGGCTCTCTCCATCGCACCTCTATCTTCG 1495697 28 100.0 32 ............................ TGATCCGCAATGACGGTGTGATAAACAGTTTA 1495757 28 100.0 32 ............................ GTTTAGTGATGAGCATTCATTTTATAAAGACG 1495817 28 100.0 32 ............................ CATCAGGGAAAAGATGGTCAAACGCTGGTTGT 1495877 28 100.0 32 ............................ AAAAACACCAGGTATCATGGATTGGAAACAAG 1495937 28 100.0 32 ............................ TGAAGCTGTTAACGTAAGTATGAAGCGTATAA 1495997 28 100.0 32 ............................ AATACTGCCGATAGTATTTATAATTATCATTT 1496057 28 100.0 32 ............................ TTTAAAATACGTGGAGGGAAATAAATATTACA 1496117 28 100.0 32 ............................ ATCAACTGCTACTATGACCCCATCATTTTGTG 1496177 28 100.0 32 ............................ CGCCACTGTTGTCGAGCCATAACCAACTAATT 1496237 28 100.0 33 ............................ TCACCGCAAAACGGACACTGTGGCATTTCTGAT 1496298 28 100.0 32 ............................ GTTTTGAAATACAATAGTTATTCCATATTTCA 1496358 28 100.0 32 ............................ TGATAGTTTGGTTTGGGGTAATGGATCTGTGT 1496418 28 100.0 32 ............................ TGTTACAGCTTTATGAGCGCTTATATCTGCCT 1496478 28 100.0 32 ............................ GGTGAGATTGGGGAGTCATTTTACGCTCGCAT 1496538 28 100.0 32 ............................ GCGCGGAGGTTCTTTAAAATTTGACATCATCC 1496598 28 100.0 32 ............................ TGCCCAGCGAACACATCCTCGTCAACTTCATA 1496658 28 100.0 32 ............................ AATACTCTCGGCATAGATTTAGCAATTATTGT 1496718 28 100.0 32 ............................ CACGGTTCATCAAGTCCGTCATGGATTACGTT 1496778 28 100.0 32 ............................ AACAGGCTGGCTAAGGGGAGAATATGGGTAAA 1496838 28 100.0 32 ............................ TTGCGCGGTATTAAATCATCACTGGCCAGACG 1496898 28 100.0 32 ............................ TATCTATTAATCAACTCACCACAGCCCACCGC 1496958 28 100.0 32 ............................ GTTGAAAGTCACAAGCGACAATGCACGCTGTT 1497018 28 100.0 32 ............................ ATATTCGTGCCATTCAGATTCAAAATATCATC 1497078 28 100.0 32 ............................ CGGCGTCGAACCACCTATGATATTAGCATCTT 1497138 28 100.0 32 ............................ CGTCATCAGAAAGTCTGACAAAATACGCCCCA 1497198 28 100.0 32 ............................ AACATAAACGGATTCGAACAATTTGCTTATTT 1497258 28 100.0 32 ............................ TACCACTAGTCAAGTTAACGAAGTCACCATTT 1497318 28 100.0 32 ............................ CCTCAAGAGGGGAATGGTGAGAGCGCTGATAA 1497378 28 100.0 32 ............................ TATCTCAATACAAAGAGCAAGGAATGTTTGCT 1497438 28 100.0 32 ............................ CCGAATTATCAGCGGGTTTGCATTTACCAAAA 1497498 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 1497558 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 1497618 28 78.6 0 ......T...GT......A..AG..... | TA [1497638] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTGAAAGGGCAGAGCCGAATTGACGCTGCTATGCAGCAAAAAGCACGATTGTGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGCGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATTGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAATAAATCAGTAGGTTATAATCATCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //