Array 1 94295-94132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWG010000066.1 Aggregatibacter actinomycetemcomitans strain SL7469 900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 94294 32 100.0 34 ................................ CCGACTCTAAAACAGGGGCAATGGGCTGACTGTA 94228 32 100.0 33 ................................ ATTTCTTTTACGTTAAATTCGCGGAAAAAGTAA 94163 32 96.9 0 .....................T.......... | ========== ====== ====== ====== ================================ ================================== ================== 3 32 99.0 34 GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Left flank : TTTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTCTAGAAGACCCGGAAGGACAAGCCAGGTTGCGGCGCGTGGCAAAACTGTGCCTCGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAATTGCTCAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGGGCAAAACCGGCGGTGGATGTGTTTAAAGATGTGCTGATTGTGTGAATCGCCAACCTGTAGTTCTCATGGAAATACAGCGGGGTCGGCGAATCCGAAATGTTCTTTAACAATCAGGACCTTGGAAATGCGGGTATAACGGATTAGGCTGTGTTATACTCGCGCTCACTGCTTTTTCGGGGAGCTTAGCGAAATCGGGGCTGAAAAGCCTGATGGGACAAGGCTTTCGGGAGAGGCA # Right flank : CACTTAACATACGCTTTTTATGGGCATTTAATCAGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGACTTCGATACTCGCCAAGCTCACTATTTGTTGGTCTGCACAATTTTATACAATCCTTTCTCAATCTTATTCAACATACCGGTAATCAAAAAACACCTCCAAAATCGACCGCACTTTTCCTCCATAAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGCACGTAATTTTTTCGTGACATCAACCATGACTTTCAGTTGCTCGATGGTTTCTTTCCAGCCGCGGGTTTTTAGACCGCAGTCCGGGTTGACCCATAGGCGTTCTTTCGGTACCACTTGGAGCGCTTTGCGGAGCAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTATT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 118654-120339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWG010000066.1 Aggregatibacter actinomycetemcomitans strain SL7469 900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================== ================== 118654 36 100.0 30 .................................... TAACCGTCAAGTGAGCCAAGCCCGGTAACT 118720 36 100.0 30 .................................... AAAAGACCAGATCGCCCGCGTCGCGGTGGC 118786 36 100.0 30 .................................... AACAATACCGCGCGTTATTAGCCAAGCGCG 118852 36 100.0 30 .................................... TTTGCGCCAGTTGCGTCTATGTTTGTAAAA 118918 36 100.0 30 .................................... TTTATCACGAACAATGCCCGCATGGATATT 118984 36 100.0 30 .................................... AATAAACTAGAAAACACATCAATCAACCCC 119050 36 100.0 30 .................................... AATACGACGCGCTGGATACCCTCGTTCATG 119116 36 100.0 30 .................................... GACCAAGGAAGCGCAGGCGTGGAAAGAACG 119182 36 100.0 30 .................................... ACATCGGAGCCACCATCTGATTTGCGCGTA 119248 36 100.0 30 .................................... CTGCCGATTTAGGTATTAAAACCGATACAA 119314 36 100.0 30 .................................... AAAGAAGCTGAACTCGAGGCGCAGTATCAA 119380 36 100.0 63 .................................... CCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATTA 119479 36 100.0 30 .................................... GCGCTGATGAGGGCTTATCACGCCCGGAAT 119545 36 100.0 30 .................................... TGATATCGCTCACCGCTCCGATGTAGTGAG 119611 36 100.0 30 .................................... GTTCTCTCTACAATAAAATTCCTTTCCAGT 119677 36 100.0 30 .................................... TATTCATGATAGCTATCCTTACTGCTGATA 119743 36 100.0 30 .................................... AAGCGCGCATGAGTGCTAAGCCCATTTTTG 119809 36 100.0 30 .................................... TGTGGTGTCAATTGAGCGCACCACAGTGTC 119875 36 100.0 30 .................................... TTCGCAACATCACGGCGGATGTCTCTTGCT 119941 36 100.0 30 .................................... AGAATCTCTTTTCTTATCATATAAAAGTAA 120007 36 100.0 63 .................................... CCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATTA 120106 36 100.0 30 .................................... GGTTTGAATTTGCCATGACGAACTCACTTT 120172 36 100.0 30 .................................... GCGCGTCAAAAGTAGATTTACTGCCGCCCG 120238 36 100.0 30 .................................... CACGAGCAAAGCACAATGAACAAATTAACC 120304 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================================== ================== 25 36 100.0 33 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGGTCATCGCGATTACAACTTCAAACACAGCACCGGCGACGGAAGAACCGGTATCGGCAGATATGAAAAAATCGAGCGTTTCGATTTAGGTTTTAAAGTACAAGCCACCGAGAAAAATGCCATTTATGGTGCTTATTTATGGGGAACCGGTAAAAATGAAGGACTGGCGCATAGCAAAGCGAGAGGTTGGGTGCTTGGTATCGACCATAAATTCAACAAACACGTTGCAGTTTACCTTGAAGGCGGTAAAGCGCGCGTGAAAGAAAACGGCAGAAAAGTGGCGGAAGGCACACGTGTCGGTTTAGGTACCCGTATTACATTCTAATTTTATTCAAACAACAATACTGTCTTTTTTGGCCGATGACGCGAGTCATCGGTCTTTTTGCGTTTCTTCGCCCGCATTTAAAAAACGTCGTCAAAATCCACCGCACTTTACTTTTGTGTTAAAATCATTTCGCAGTGCTACAATAACATACTCCGTCGCAAATCTCACGGGATA # Right flank : TCTCGATGGCGCCAAGCCTTATTTTTCAAGGTTTGGCATCGTTTTTATGTTAATAAAAATGCTGAATAATTACGACTTTTACGTAATCATTCAGCATTTTTTCTTTTCAATTTAATTGAAAAAATAACCGCACTTTTGACTAGAAAGTATTCTATTAAACTTATTTTTATTTAATGAACAGCTCAATAAATAAGCATTCAAACATTTTATTTGTATATTTTTTCAGCGTTTGAACAATCAGTTTAATTAAAATAGTAGTAATTGGTTCGCATTAACTTTCTTCTCTTGAATTTTTACCTCACCAACCAAAATGGACATTCCTGCATATTGTTTTTCCGTTACTTCAAGACAACGGATAGAGCCATTTTCCGGAAGATTCTGAGATAAACGTCTATTGTGCTTTTCTAAAGCATCTCTACCTCGAATTAATCTTCCATATACTGAAAGTTGCAGCATTTGATAGCCATCTTTTAGTAAAAATTGACGAAATTTATTTGCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //