Array 1 9026-8752 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794318.1 Streptococcus sp. HMSC074B11 Scaffold1816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9025 28 100.0 34 ............................ TTCTTGAGATTCGAGCGAGAAATAAACTTAATCA 8963 28 100.0 33 ............................ TGGAGGTATTCAAATTAATGTACCTCGCGAACC 8902 28 100.0 33 ............................ CAGGTTAAAAATAAAAAAGGGTACTATTTCCAG 8841 28 100.0 34 ............................ CATAACTTTCAAAGGTGGTAAAGTAAATTCTTCA 8779 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ATGAGCTTAGCAAGTTGGGTTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAGGAGGTAGTTCCTCATAGAGCTTTACAGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGAGATTAGCGGTTTCAATAGGATCTTTTAGTGTTTTTCCCGCACACGCGGGGGTGATCCTACGCTATGTTTGCAATTTGTGAAGCAAATGGTGTTTTTCCCGCACACGCGGGGGTGATCCTTGAAAGGAGAGGAACATGACCTCACAGGAATGCGTTTTTCCCGCACACGCGGGGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : TGCATTAAATGGTATTTGGCAATCTATTAAAGAGTTTTTCCCGCACACGCGGGGGTGATCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCGCACACGCGGGGGTGATCCCAGGTTTCTTACGGAAGATATTCTCAAAGAGATGTTTTTCCCGCACACGCGGGGGTGATCCTGGCGAACTTCACACAGACCCAGCTTTTAAAACGTTTTTCGCGCATACGTGGGAGATTGACTACATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTCTTATTATAGGAAAAAAGCATATTCTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTGAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9276-9125 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794318.1 Streptococcus sp. HMSC074B11 Scaffold1816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9275 28 100.0 33 ............................ TACGCTATGTTTGCAATTTGTGAAGCAAATGGT 9214 28 100.0 34 ............................ TTGAAAGGAGAGGAACATGACCTCACAGGAATGC 9152 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================== ================== 3 28 97.6 34 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGGCTCTATTAGAACTAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGATATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAGCAAGTTGGGTTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAGGAGGTAGTTCCTCATAGAGCTTTACAGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGAGATTAGCGGTTTCAATAGGATCTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTTCCCGCACACGCGGGGGTGATCCTTCTTGAGATTCGAGCGAGAAATAAACTTAATCAGTTTTTCCCGCACACGCGGGGGTGATCCTGGAGGTATTCAAATTAATGTACCTCGCGAACCGTTTTTCCCGCACACGCGGGGGTGATCCCAGGTTAAAAATAAAAAAGGGTACTATTTCCAGGTTTTTCCCGCACACGCGGGGGTGATCCCATAACTTTCAAAGGTGGTAAAGTAAATTCTTCAGTTTTTCCCGCACACGCGGGGGTGATCCTGCATTAAATGGTATTTGGCAATCTATTAAAGAGTTTTTCCCGCACACGCGGGGGTGATCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //