Array 1 32000-32392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEOB010000035.1 Staphylococcus sp. GDX8P104P-2 GDX8P104P-2_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 32000 36 100.0 36 .................................... TTCATCATATCCTTTTCTTATTAGATTGTGTGCAAT 32072 36 100.0 35 .................................... GTGCGACTACTTCGTCTATATCATAAGACCCTACT 32143 36 100.0 38 .................................... TTTGTTTTGTTTAATAATTCATTTAAAATGTACTCTTG 32217 36 100.0 34 .................................... TTTTATTTTTCTAACTTGTCTATTATGTTACACT 32287 36 100.0 35 .................................... CTTCATGGATTGCAAATATCTAATCCAGCTAATCT 32358 35 91.7 0 ...............................-..GT | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.6 36 GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Left flank : TCATGCTTTTCTTCAAAAGAATCTGATACATATTTTAAAAAGTTTAAACCTAATGCTACATTTTTATACTCAGCAGTATCCATGCTTTCTCTTAATTTATCGGCAGCTTGCCATAATTTTTCTTCAAAACCTATTGTTGTCATTAATAATACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTAGTCACTAATTTTATCCCTTATTTCAAATTAAAAAGGAAGAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATCAAATGTAGTATACTTTTAATATAAGGGAAATCATTATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTATCGTTAGTTGTCACATTTTTTGACAGCTAAAATAATAATTGACCCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : TGTATTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTACTTCTCCCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 41107-41865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEOB010000035.1 Staphylococcus sp. GDX8P104P-2 GDX8P104P-2_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 41107 36 100.0 35 .................................... AAGTCGCTTATCTGTTCTATCCTAGTAGCAAACTT 41178 36 100.0 38 .................................... CCTATCTCACATTCAAACAGTTCATTTTCAATAAGTTG 41252 36 100.0 36 .................................... TGTAGTATCTATGACCACCGATACCACCAGTGAATA 41324 36 100.0 33 .................................... CATAATTTATCATATCCTTTTTATTTGGTTTTT 41393 36 100.0 35 .................................... TTTAACATTTTAATCATCCTTTTTTAGTTTTTTTT 41464 36 100.0 36 .................................... GGATCATAGAAAATCCAGTGTTTATAATTAATTTTA 41536 36 100.0 35 .................................... CCGGCTATTTTAGTCATAATGCCAATTTCACTTTT 41607 36 100.0 37 .................................... GAATAATTTTTGTACACCTTGTAATTCGTTCATAATA 41680 36 100.0 38 .................................... AAAAGTTTCTATAAGTAATCTTTCCAGCAACTGGTACA 41754 36 100.0 40 .................................... TTATATTTTAAAGCGTTAATATCAAAGATAAACGCGAATA 41830 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 100.0 36 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAGCATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTTTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCATTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCTATCT # Right flank : CATTACTTGCTGCCTCATTGTATTCTTTTGTAATTTGTATTCGATAACCACTTTGTATAAGAGAGGATAATAATTTATAATTTCATAGTTAACTTGATTTTCAAATACAAAAAAACTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAATAAGTAATGAGATTAATAAGATATTGGAATTAATAATTAGGAGGGGTTAAGTAGTGGAGAACATTGATGGTAATAAAATAAATAGTATTTTAAATTGGGTTTATGAAAAAATTCTAAGTGGCTTACCAGGAGCTTATTCAGCCGAAGAATTAGCAAATAAATATTTAGAAAAATATAAAGATGAAGACAAAGTTATTAATAAATTAATAAAAGGACAGTTAAGTAAAACTGAAACTTTCGGTTTCATTACAGGCTTAGGCGGTATAGCTACACTACCAGTAGCACTCCCCGCTAATATAATTTCAGTTGTATATGTACAAATGTGAATGATTGCAGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //