Array 1 3703-4645 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFZ01000089.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 strain DSM 18390 Scaffold89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3703 29 96.6 32 ............................T ACTATCAATGCTTCTAAGGTACTTACTAGTAA 3764 29 100.0 32 ............................. TACCGGAATGTCTGTCCTTGTCAAATGCTCAA 3825 29 100.0 32 ............................. AGCCTATTCGCAGGATTTGTACACAACGTTTA 3886 29 96.6 32 ............................T AGGCTAGTTTATGAATATTTTTAATGCAAATT 3947 29 100.0 32 ............................. TGAAACATTGTCCCAAAGGTCTGATATGGATA 4008 29 96.6 32 ............................T CAGATGCGGTTTTAAATGACATCTCCAATTTA 4069 29 100.0 32 ............................. AGTACCTTTACCATATTGATCAACGAGTGTCT 4130 29 100.0 32 ............................. TGCTTTAGCGGTACCTTTAAGTGACTTGTTAG 4191 29 96.6 32 ............................T AATTCTTTTTGGGGTAAGGTTTTGGATGTTTT 4252 29 100.0 32 ............................. GGATCCAAACAGCGAAACCGAACTTTTGAGAT 4313 29 93.1 32 ...........A................T ATCAATAACGCGTTTTGAGGCTTTATTCTTGG 4374 29 96.6 32 ...........A................. TGCCATGCGTTCGCATTCGCCACGCCGGGTTG 4435 29 100.0 32 ............................. TTGGTACCTTTCGGGAAACTGTCAACTTTCTG 4496 29 89.7 32 ......T...........A.........G TATGTACGCACACAAATCGACAAACTCTTTGA 4557 27 82.8 32 ..GC........--..............T GCTTGCATGGGGCCCGGCTTCCCTGGGCCTCT T [4579] 4617 29 82.8 0 ..G.........G..........A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : TCGTCACAATTTGACAACCCGTTACCTGCTAAGTAACGGTGACTACATCACCGGAAATCGTAAATTGGTGAAGATGGGCCGCCACCAGCAGCCAAAACGGTTGGTTGTGAAGAAGACGATTAATCGTTATGGGGATGCAAACTTTACCAAGCGCAACGGCCACTTCAAGAAGGGCACCAAGCTGACCATTAAGAAGGTCACGTTCAGCCACGAATTTTCAAGAACGCGGACTGGGGTTCAGCGGTATGTTGTGAATGGTGGCTATGTAACGGCTAGCCCGAAATTTGTGACAGTTCAGTATTAAATTTTGATTTGAGAACCTGGGGGACCGGGTTCTTTTTTGTTCGATGAAATGTGTGCGAATCTGATTTGGATTTTGTGGATTAGGCGAGATTTGTTTGCTATGATTAGGTTGGTTGCCAAATGGAGTTCGAATGCAAGTTAGGGTAATTTAGCTAATTCGTAATTTCACAATGCCGGTATGACGGGATTTGTTTAGA # Right flank : TCAAATTATTGATTACGCAGCCAAATTGGACAGAAAGATTGAAAACATCATCGCCTCCATTTGATCTTTTCCCGGACTAAAAAATTGCACAGATTGGAGCAAGTTATTTGAACGCTGTCACCAAAATCAAAATAGCCATATGGTTGTCACGCTTGGCATACATCCTGTTCTTCTTCTGGCTAATTGTTGATTTCTTTGTACTAGACCGCAACGCCGGACTACCCGGATTACTATTCCTTTTAATCGGTTTTCCCTTAGTTTACTTAGAAAATCAATTAGAAAAATTAGATCCGAAGTACCGGAAATCGCTAGCAGGCACGGTCTGGCGATACCTTTTACTTCCGTGGTTTATTGTGATGTAGCATTTTTCGCACTCACTTTAGACGCATACTATCACTAATCTTTGTCGGCACGGGCGACGTCACGCTTGGTTACATTATTTATCGTATTTTTCTTAACCGAGACGCTTTTATAGTGCCGACGCTGGGAAAGGGTATTGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38919-34889 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFZ01000012.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 strain DSM 18390 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 38918 29 96.6 32 ............................C AAACCGGCTACACAAATTGGCGACCCAGACAA 38857 29 100.0 32 ............................. TGCACCAGCTAAACCTAAAGTATTAACCAATT 38796 29 100.0 32 ............................. ACTAACTATATCAAACAAGCAGAGTGGACTAA 38735 29 100.0 32 ............................. TATATACCTAATTATTCAAAAGTCCTATAACA 38674 29 96.6 33 ............................C TAGAACTGAATCACCGAAGCAAATTAAAGAGGA 38612 29 100.0 32 ............................. AAGACTTTTTAAAGCATAGAGGCTTTGTGTTA 38551 29 100.0 32 ............................. CAAATTATACTGGTACACTTTTACTGGTTATG 38490 29 96.6 32 ............................C TTGGCCGGCGACAAAGTCATCATTTTCTTTGC 38429 29 100.0 32 ............................. GATTATACAAGTTTAAATAGTGATATCAGTTC 38368 29 96.6 32 ............................C CAAACCCAGACACTGAATTGGCTGAAAGCCAA 38307 29 100.0 32 ............................. AATTTATTCTTTCTGTAATCGTGAACTACTCG 38246 29 100.0 32 ............................. GGACCGGGCATTGGCAACGAGCGATGAAATTA 38185 29 96.6 33 ............................A TAAATACCCCTGATAAGATTTCCCCTCATCCCA 38123 29 100.0 32 ............................. CAATAATTGCTTCTAAAGACTGTCCAACAGTA 38062 29 96.6 33 ............................C GATAACTGAACCGCCTTTTTGCAAACGGGGATA 38000 29 100.0 32 ............................. ATGGCCGTTATCAGGGCTGGTGGTACTGATGA 37939 29 96.6 32 ............................C ATCTTCATCCGCAAGACAGACGCTCTGGTTAA 37878 29 96.6 32 ............................C TTTGCGTGTCAAAGGATCAATCTGTAAAACAG 37817 29 100.0 32 ............................. AAGCTTTTTTCCAGCCTTTAAATCAGCAGTTG 37756 29 96.6 32 ............................C TGTGGGGAAACTTTACGTTTTCGGAAAATTGG 37695 29 100.0 32 ............................. GCTAAATGGGTAGAGAAGCAAGCTGCTCTATG 37634 29 96.6 32 ............................C AATCCAACTAACGAACCTTTTACAACCACTTT 37573 29 100.0 33 ............................. ATACGAGGGAGACGTTTTAGAATATTGTTATGA 37511 29 100.0 32 ............................. AATGCCTGCCATAAAGTTTTGTGAATCGGACT 37450 29 100.0 32 ............................. TAACACTTTTGGACAACCACAGTCATATCATG 37389 29 100.0 32 ............................. TATACGCCACTGCTGATTTATTTATGCGACAA 37328 29 96.6 32 ............................C GTGGAATCCAGCCTTGGGATTGTTTACATCCG 37267 29 96.6 32 ............................C GGGCAATGAAATTGACTTATGTACCAATGGTG 37206 29 96.6 33 ............................C TCGTTAAACAACTTTGTGAAGCAAAAAATATGA 37144 29 100.0 32 ............................. GATATTTGAATGGCCAGTCAACAAATACATAA 37083 29 96.6 32 ............................C AATCAAAGAGATGACACAAACTATCAACGCTG 37022 29 100.0 32 ............................. GGATAATCTGACGCTCTGCAACTTTTCCAGCT 36961 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 36900 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 36839 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 36778 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 36717 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 36656 29 100.0 32 ............................. ACTCTATGTATAGGAGGCAGCATGTAAATGCA 36595 29 100.0 32 ............................. ACTTGTAATATTCTCTTTAAAGTTTTCTTTAA 36534 29 100.0 63 ............................. ACTCTATGTATAGGAGGCAGCATGTAAATGCNCCAACCCCATTTTTATCAACACAATCCTTAA 36442 29 100.0 32 ............................. ACTTGTAATATTCTCTTTAAAGTTTTCTTTAA 36381 29 100.0 32 ............................. GAACTCCTATGGAACTAATATGAGTTTAATAA 36320 29 100.0 32 ............................. ACTGATTTAGTTGCTCCATAGTTATTAGCTAA 36259 29 100.0 32 ............................. GTTTCGTGATTTATCTAATGCACCCTTTAATA 36198 29 100.0 32 ............................. CAAAGGATGGGTTAAAATGTTAAAAAAGAATT 36137 29 96.6 32 ............................C AACATTGGAAAATGGCAAGCTATTCCAGGACT 36076 29 100.0 32 ............................. GATATTTGAATGGCCAGTCAACAAATACATAA 36015 29 96.6 32 ............................C AATCAAAGAGATGACACAAACTATCAACGCTG 35954 29 100.0 32 ............................. GGATAATCTGACGCTCTGCAACTTTTCCAGCA 35893 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35832 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35771 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35710 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35649 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35588 29 100.0 32 ............................. CCCAACCCCATTTTTATCAACACAATCCTTAA 35527 29 100.0 32 ............................. ACTTGTAATATTCTCTTTAAAGTTTTCTTTAA 35466 29 100.0 32 ............................. GAACTCCTATGGAACTAATATGAGTTTAATAA 35405 29 100.0 32 ............................. ACTGATTTAGTTGCTCCATAGTTATTAGCTAA 35344 29 100.0 32 ............................. GTTTCGTGATTTATCTAATGCACCCTTTAATG 35283 29 100.0 32 ............................. ATGAAAGAGCATAAGCACCCTTTATTGATAGA 35222 29 100.0 32 ............................. CAAAGGATGGGTTAAAATGTTAAAAAAGAATT 35161 29 96.6 32 ............................C AACATTGGAAAATGGCAAGCTATTCCAGGACT 35100 29 100.0 32 ............................. TTTCAATCCGTTCTTTAATTGGGAGAGCGGCT 35039 29 100.0 32 ............................. AAATTATGAGTGAAAAAGTGAAGGTGCCACAG 34978 29 100.0 32 ............................. TGTACGACGGTTCAGAAGTGCGCTTGTACAAT 34917 29 79.3 0 .............C.........C.AAAA | ========== ====== ====== ====== ============================= =============================================================== ================== 66 29 98.8 33 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCTAAAAATCAGATTATTGCCATCGGTGCCGTTAAGCGACAAAAGAATGGTGAAGATGTTTCATTTCATAAATTAATTCGAATTGATGGCCAAGTTCGCAAGAAGATTACTGAGTTAACCGGAATCACATCTGAACGGTTAAGTGCAGAAGGCGTTGAGCTGGTCTCCGCGCTCCAAAAGCTGGAAGCCTTCGTTAAGGATGCGGTGATTGTTGGGTATAACCTCCGATTTGATGAGGCCTTCTTATCCTATAATATTCAAAATAACGGACTTCCGGAGCTGACTAACCAGATGATTGATTTGATGCCGGTTGTTAAGAAAGCTAATCAGTTTCTGGAAAATTATCGATTAGCAACTGTGCTGAAAGATTACGATATTGAGAATTTAACACCCCATCACGCATTAGCGGATGCGGAAGCGACTTTGTTACTGGCGATGAAGTTAATGAAAAATGGCAGTTTTCACATTTAAGAATGCTGTTATATCGGCTTTTGTTTAGT # Right flank : CAACATCCCGATCAAGTGTAACCAATCCCCATCCCGCAATTTTCTTCCCATCTCACATTCTTATCCCTGTTCAAATTCCCCGCCGTGAACTAAAATAAAATTAAATTAACGTTATCCATTACAAACCACGCAACGCGGTGACCACTCCCGCTCATCAGTCGAGGTGACGCACATGACCCAGCGATTTGTCCAAACTGAACTTTTAGGTGACTGGCTTCTTCAAACTGACATTCGCCAATCGTTTTTAAAACCGTAGCGAAGGCCGGCAAAGAAGTGGCGGCTCTGTGCCGTCGGGAAATATCGCAGATCATCTACGACCTTCGCGGAAAGTTCATTCTCACTGACATTTTAAAGGCCCTTCGATTTCCGAAGGCAACCTATATGTATTGGCAGAAACGGTTTCACCGGCCTGACGCTGATAAAGCCCTTGAGGACCGGATTCTTGCCGTTCATCGTCAGAATCCGGACTATGGCTACCGGCGGGTGACGATTGCCCTGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51186-49877 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFZ01000012.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 strain DSM 18390 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51185 29 96.6 32 ............................C AAAATCTTCTCGTGACAATTTATTGTCAATGT 51124 29 100.0 32 ............................. GAAAAAGGATATTAAAAATGAAGACTTAATCC 51063 29 100.0 32 ............................. CCAGTAGTCAATCAACTCCTTAAAGCCTCAAA 51002 29 100.0 32 ............................. CCAGTCACGTTTGAAGATATTTCCACCTTCAA 50941 29 100.0 32 ............................. AATCTTAATTTTGTCGATTTAAAAGAAGCATC 50880 29 96.6 32 ............................C GTCATGATAGCTAGAATTATTGCTTAAAACAG 50819 29 100.0 32 ............................. ATATATATGCAAGGGAAAGGACAAAATTTTTC 50758 29 100.0 32 ............................. GTTGGCATCCTGTTCAATCGAACCAGTTTCGC 50697 29 96.6 32 ............................C GTCATGATAGCTAGAATTATTGCTTAAAACAG 50636 29 100.0 32 ............................. ATATATATGCAAGGGAAAGGACAAAATTTTTC 50575 29 100.0 32 ............................. GTTGGCATCCTGTTCAATCGAACCAGTTTCGC 50514 29 96.6 32 ............................C GTCATGATAGCTAGAATTATTGCTTAAAACAG 50453 29 100.0 32 ............................. ATATATATGCAAGGGAAAGGACAAAATTTTTC 50392 29 100.0 32 ............................. GTTGGCATCCTGTTCAATCGAACCAGTTTCGC 50331 29 100.0 32 ............................. CATGTTCCAAAGAGTGAGGCGCATTTGAAGAA 50270 29 100.0 32 ............................. CGTCAAGGTTTTCAGTGGTCTTGCCAGCCTTA 50209 29 96.6 32 ............................C TGACCGCTTGCGCTTCTTCCAGGAGGTTCTAA 50148 29 100.0 32 ............................. CGTCAAGGTTTTCAGTGGTCTTGCCAGCCTTA 50087 29 96.6 32 ............................C TGACCGCTTGCGCTTCTTCCAGGAGGTTCTGT 50026 29 100.0 32 ............................. GATTGCTGCTGTAATTCATCCATTTGTTTCTG 49965 28 96.6 32 ........-.................... ATTGGATAGCAACTGAAAAAGGAAGTGATTCC 49905 29 69.0 0 ..................T..AAATATTG | ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.5 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TGTTTAATAGAAACATTTTGTGCCATAGTGAGTTTGCTTCCTTTCTAGAAACTGGCGCGATCATCCGTGAAGGATAACGGCGACAGAAAACAGACATTAAATTGAACGACCAACTTCTATCCAAAAGTAATGGGGAAGGTAAACACTTACATAAACGCGATTTTGGTTTTGCCAAATTAAATTATCCACCATACTTTTGGTAACGCTTACATTTTATTCGGTTTTGGAAAATACACAAGTAATTAGACTTGGGATTGAGGGAGCTGAATTGTATTGCTGGTAGATGAGATTGACTAGTGTGTGAGCAGCAATAGCCATTTTGACCGCGGAAGTTTTTATGTAAGGGAGTCGTTTTGAGGTGAGAATTGTCCATTTTGCAGTGGTGAAATTGGTATAATGAGATTGATTAGATCGTGAACGGCGTTTTTGTCTGAATACAAGTTAATGAAATTTTGGTTATTTCTGAATTTGGAATCGCGGTATGACGGGATTGGTTTAGT # Right flank : TCGGATGCCTGGATCATGAGGAATATTGTTATGGATGCAGATGAATTGATAAGGGTGAAACAAATTACAAAGCAGGCTTCACCCTTTAAAGAAAAGGACAGTGTCCCTGTTTGGGAATAGGAGGACGAGATGGATCTTCGGGAGAAAATAAAAGCAATTTTAGATAGTGATATTAGCGCTTATCGAATCGCTAAAGAAACAGGGGTTCCGCAGCCAAATATCTCGAATCTTCGCAATGGGAAACGTGAGATCGGTAATTTAACGTTAGATATTGCAGAAAAATTAGGTAAGTATTACGATTCTTTAAAATAAATTGTATTTTTGCTTGCATATCTATATCATATGATATACATTCTAATTGTAGTATTCCCACGCATGTCAGGGTCTTAATGTACAATATTCAAATTACTTTAATAAATAGTTGAAAATTTAGTCACATATCTTTGAATCTGTTCTACTGGATTGCAATTAAGAAGATATGTAGATACCACATGTATATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 56313-54633 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFZ01000012.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 strain DSM 18390 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56312 29 96.6 32 ............................C GTGGTAGCTTTTTCAAGCTCTTCAAGATCATC 56251 29 96.6 33 ............................C GTTTGCAGGAGATACGAACACATGGGAAAGTTG 56189 29 96.6 32 ............................C AAGCCGGCTACACAAATTGGTGACCCCGACAA 56128 29 100.0 32 ............................. GACGCTAGTTGCTTACCTGTTGTGGGTATTGG 56067 29 96.6 32 ............................C AGTTTGGCTATAAAACTAAAGCTGGTAATTCA 56006 29 100.0 32 ............................. CACGCCAAAATCATGGAGAAAGTTTTCAATAG 55945 29 96.6 33 ............................C TATTGCCTAACACAATACTAGATCCATTAGTTG 55883 29 100.0 32 ............................. AAGCATTCACAGCCGCCGTAACGTGCAACTTT 55822 29 96.6 32 ............................C GAAACTGATGGGATCTCATACACCACAGACCT 55761 29 100.0 32 ............................. CAAATCGATGCGCTCAGGCTTTACAGAACGTC 55700 29 100.0 32 ............................. CAATATCAATGGTGATATCTCTGACGAAAAGA 55639 29 96.6 32 ............................C TAAGGCTAAGAAAAAGGAGTTGCGGAGATGGA 55578 29 96.6 32 ............................C AGGGAAAACTCTTAGGAAACTTGCCCAAGCTC 55517 29 100.0 32 ............................. TATGAACAACTTTTGAATCGTCAGCAGGTGTG 55456 29 100.0 32 ............................. AATACGGCGCCACTAGCTGAACCAGAGGTAAC 55395 29 100.0 32 ............................. AGCATTGGTATCAAATGCTGACAGCCGCAACG 55334 29 100.0 32 ............................. GCTACTAAGTTTTATCGTGTGGGTGTCCAGTA 55273 29 96.6 32 ............................C TTAATTTATCATATCGATGCCAAAAAATATTA 55212 29 100.0 32 ............................. AACGTGATGCGAGAAAAAGATAAGTTTGACCG 55151 29 100.0 32 ............................. TGATCGTTTCCAAAGACGAAAAATTAACCGCA 55090 29 100.0 32 ............................. GCCAAAGCGTGGCGCCGTTGCTTGTCATGTAA 55029 29 96.6 32 ...C......................... ACACACGTATGGTGACCAAAATACACACGTAT 54968 28 86.2 32 ...C...................C-...C CCACGAAAGGGCACGATGTTTAACGAGACGCC 54908 29 93.1 32 ...C........................C GACGTCATGGAAACTGAACAGTACAACGTCGT 54847 29 93.1 32 ...C...................A..... GAGTTAAGCAAGCACGGGATCGATTTCACAGT 54786 29 96.6 32 ..................A.......... CATGAACCGAGATTTTCCAGATAACCGTAAAG 54725 29 89.7 32 ...........AC...............G AACTACAAGTTGAGCTGGACGGACATCGCCAA 54664 29 89.7 0 ..A..T.....................T. | GT,A [54636,54644] ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.9 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GAAGGTATTAAGATCAACTATAACGATGGCTCTAGCAATGCGAAGCCGATTGCTGCTCATCATGCCGCAACCCATCACCGGCAATCAACGGCAAGTCGATCTCAGGGCGGCAGCGCAACGCAAGCCGCTCACTCGACAACTAAGCAGGGCAAGTGGACGGTGGCGGCGTCGGGGATGGTGTTTGTCTCCGATAGCAACAAGTTCTATACGGAAGTCACTACCCCTGGGAATTATCAGTATATGAGCAGGTCACAGGCAGCCGCGAGTGGGGCAACCCAAGCGGCGCGGGGGAACCAGTATGCCCGGCCGTGATAATTTGATTATTAAAATTGTCGTTGATGAAGCAGGCAATCTTCTTTGGGGAGGATTGCCTGCTTTGCAGTTGTGAAATTGGTATAATGAGGTTGATTTGATGGTGAGAGGTTTAGGAATGAATGCAAGTTAAAGAAATTTGGGCCATTTCTGAATTTGAAATCGCGGTATGACGGGATTTGTTTAGT # Right flank : GTGACGATAGATTTGTCAGATCAAACTATTAAAGAGCTGGCGGATCGGATGACCACCAAAGGATTTGGCTTTTTGAAACCTGAATCTGAGAATCAGTCTTGAAATATTAAGGACTAATTGAAAAAACTATTGGTTACTGGAAAGTTATTGAGATGTTGAGTTGCCCTGGCTACAGGATGACACCTCGTTATTAATTAACTCGGCCATAATGTTGATAAAAAAACTATACGTCGTTGTAAACGCAGCGCAATTTGTGAGATATTAGTAGTGTAATTTGAGGTTGATGAAATCAACGGCATGTCCAATGATGTCCAAAATGCGCTCCCATTATCCTTTTATTCTCATGGAATTGTAGTATAGAAAAAAATTTAATATTTTTCCTCTCTTAAAATGATAGCGGCTTTGAACTTCGACTTCGTGTATCCGTTTTGTTAGAAAAAAGCACTTACTTTCTAGGATACATAAAAACCTCAATCAATTGACTGGGGTTTGTGTTGGAT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //