Array 1 36982-41342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWY01000009.1 Campylobacter curvus strain SS119296 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================================================================== ================== 36982 30 100.0 34 .............................. TACTCTATATGCGCCCTTAAACTTCGCCTTGCCA 37046 30 100.0 37 .............................. GGAATTCAGGCGTCAGCAAAGACTTTGTAGCTGAACT 37113 30 100.0 36 .............................. TACATACCACCATAATATCCTACACCGCCAGCTATG 37179 30 100.0 37 .............................. GAAAACTACACTAATCAAACGGACGCGAACGGCGTAG 37246 30 100.0 36 .............................. TTAAGGCACGCGATCATCTTATCGCTCAAAAAGTAT 37312 30 100.0 37 .............................. ACGGAGTTATAAACGCCTTTTTCGTCGCTCCTATCAC 37379 30 100.0 36 .............................. TGCCTGAAAGGACCAATACGTCACCACGTTTTAAAG 37445 30 100.0 34 .............................. TACAAGGGGTCGGCACTAGCACTTCTTGATACTC 37509 30 100.0 38 .............................. AAATGCTTATTGTAAGTCGCAATATCGCTCCTAAGTGT 37577 30 100.0 37 .............................. GATGACGATGATGATCTAGAAATAGGAGCAGGTTCGC 37644 30 100.0 34 .............................. TAGCCTGTCTCAAAGCAAAGCCCGTAAAGAAATT 37708 30 100.0 38 .............................. AATAAGCGCACAAGATAAAGCCTCTATGCTTGAAATTT 37776 30 100.0 37 .............................. CCGCTTTTTGATAAAAGCTAAAATCATTAAAAATTAT 37843 30 100.0 35 .............................. GAATATATGCAAACGGATGGAGGAACCGGGCGTTT 37908 30 100.0 36 .............................. GGCTATTCGGCATTGACACGCCCGAATTAAAACAGC 37974 30 100.0 34 .............................. CCTTGCAATACCGTGATCGTGTCTCCGTCATGAA 38038 30 100.0 35 .............................. ATTGCGGCAGAGTTGTCGAAAAAATCAGTCACATC 38103 30 100.0 37 .............................. CGATAAATGGTGGGCAAAGCCTGCCGGTAGCCGTGCG 38170 30 100.0 36 .............................. TCCCTAAAAGCCGCAATAGTTCTATTGCCATAGATG 38236 30 100.0 37 .............................. TGCTAAAACGGGCGCAGAGGAGCGAGAGCTTCCGCCC 38303 30 100.0 35 .............................. TGATAGGAGTCAAAGAATAAGGGCAAACAGACGAA 38368 30 100.0 34 .............................. TTAGCCAACAAAGTATTTAATAAAGTTAGTCTAA 38432 30 100.0 37 .............................. AATTTAATCCCGTTGGTTGCGTATGGCAATACGATCT 38499 30 100.0 38 .............................. TCGTCGCTATAAACGCTATCGTCATCATATCGACACAT 38567 30 100.0 33 .............................. TTTGTGGCGCGTCCTGAAAAGTATCTACACTAT 38630 30 100.0 37 .............................. TCGAGCTGATCATAATAGTTATATAACTCCCAATTTT 38697 30 100.0 35 .............................. TTCGAGCTTGCCGCGTAGTCTTTTGTAAGTTGCTC 38762 30 100.0 34 .............................. CGAAGACATTGACTGGGAGATAAGGCTAAAAGGG 38826 30 100.0 36 .............................. TCAAATGGGAGTGCCAGGCGTAAAGAAATTCGTAAC 38892 30 100.0 38 .............................. ATTTGCAAGACGTCATAGTATGGCATGGTATCAAATAC 38960 30 100.0 35 .............................. GGATTGTAGGCATTTGCCTGAATTTTCTCGATCGG 39025 30 100.0 34 .............................. CTCAAAGTCAAATAGCACAATACGAAACGTCGCC 39089 30 100.0 37 .............................. GTAGGCTCTTTTTTCTTGATGGTAGGAATAAGAGCCT 39156 30 100.0 37 .............................. AAATTGATAGCAGAAAAAACAGGAAGAGCTTCTGAGG 39223 30 100.0 37 .............................. TCAAACTGGCACGCTAGAAAATATTATAAATTCACTT 39290 30 100.0 38 .............................. GGCATAATCCCTTGTTTTGGCAACTCAATGGAGCCAAC 39358 30 100.0 35 .............................. TCGGTAGGCGTGAGGCTACATATTTAAGAGCTTTG 39423 30 100.0 35 .............................. CTCGAAGCACCCAAAAAAATATCAATAGTAGGAGC 39488 30 100.0 35 .............................. ATGGGCTTGATGACAAGATACACTTTGCACCAAAT 39553 30 100.0 36 .............................. GTCCATAATCGTTTGCCATATTTGCGATAGCGCTGG 39619 30 100.0 34 .............................. AAGAAGCAGACAAGCGAATAGCCGAAAAGCAACA 39683 30 100.0 36 .............................. AAGTATTCCATAGGTGGCACAAACCCCGTGTTTTCA 39749 30 100.0 38 .............................. TCTGCACTTGGTGCCGTATTTGGAGCATAAAAGAGGCC 39817 30 100.0 35 .............................. TTTGATATGGCGAGTTTTGTAAGTTCTAAAACTAT 39882 30 100.0 38 .............................. TTGGCATCACAGGCTTAAGCGGTATTTGATTTTCGCAT 39950 30 100.0 35 .............................. TAAAAAACTCTTGACATCTTTATTAAATTAGTATA 40015 30 100.0 35 .............................. GCAGTATCTATGAGACATTGCTCTAGCTCAACAGG 40080 30 100.0 35 .............................. GCCGTTGCGCCGTCTGCCGGGAGTGCGAAACCTTT 40145 30 100.0 34 .............................. AATATCAATCCGCGGTTAAATGCTTCGTCTTTTG 40209 30 100.0 36 .............................. ATTCGTTTAAAGTGGCGAACTTTTTCACGATAGGCG 40275 30 100.0 34 .............................. AAAGATATCAAAGATAAAGGCACGAAACTTACCT 40339 30 100.0 37 .............................. CTAAATCAAATTCTAAAGGTAGCGATATGAGCTGGAT 40406 30 100.0 38 .............................. TATGCACAAATGAAATTTTTGTCACCTAAAATCCTAAA 40474 30 100.0 38 .............................. TCAAAGGCTTACGCAAAAACGAGCGCTCAGGGATATTA 40542 30 100.0 36 .............................. TATCGTTGGCTTTTTGGATTTTGACGAATATCTAAA 40608 30 100.0 36 .............................. GACTACAACAAGGCATAAAATCATACGGACTTAAAA 40674 30 100.0 37 .............................. AAGCCAAAATTGAGGCGTTAGAAAAAGAAAACGCTGA 40741 30 100.0 36 .............................. CATAGATAAATTTTGCCCTCAAGCTGCACTAATGCG 40807 30 100.0 37 .............................. AAGAGCCACCCTTGCTTAAAGCACCGCTAAGCGTCTT 40874 30 100.0 36 .............................. AGGGAAAAAGATAAGGATAAGAAAGGCGAAAACGGA 40940 30 100.0 37 .............................. TAGACGCATTGGCTGAATTCAGAATAAAAAAAGACCT 41007 30 100.0 38 .............................. GAGTAGTAACATCTATCAATGCATGAATAGACACAATC 41075 30 100.0 35 .............................. CTATATCCTAGCTGATACTAATACATACACCATCA 41140 30 93.3 139 .........................T...T ATGGCCAATACCTAATTATTCCAAAAATTTAATACCTTGAAAACTGTATAAAAAATAAATAGCCTCTATTTCTAACCAACAAATACCAAATTTCTTTAGTCTATACTTGTTTGTAGTATAATTACGAGATATTTATTTG T,T [41162,41168] 41311 30 76.7 0 ...........AA.T.A..A.....T...G | T,T [41315,41319] ========== ====== ====== ====== ============================== =========================================================================================================================================== ================== 65 30 99.5 38 GTTAAAATTTATTCCGTTGGAATTTGAAAC # Left flank : ATTGATTTTTAAATTTCAAAGCATAGGAATGCGAACATCATTCTAGCAAAAGCATTGCACGAGCCTATCGTTGTCGATTTTTCTGTTTTTACTTTATCTTACTCAAACGCTGTTCGCATTTTTCTCTTTTTAAGATGCTTCACACTACGCTCGCAACCGTACACGCAAGTAAAGCAAAAAGATTTCTTTTAAATGCCATTTGCATACGCGCCGCACCTTGAAGCGAGTATTAAGATTTGATTATAGCAGAGCATATTTTTTACAAAAAACCTGCTTGATTATCTTATGCACAGGTTTGAATGCTAGTTTAATGCTTTAATTATTAGGGCGTTTTATAACAAAGAGTTTGATAAAACGATAATAAAGCTTGTTCTAAGATTTTGATAATGCCCTATTTTCTAGGTTTTTGCTTGCTAACAATTTTAAATTTTAACTATTTTTAAGATATAAAAATATAGACTTTTAATTTTAATGGCCCTGAAATTTGATATTTTGGTGCT # Right flank : GTATCGAGAGCATATTATAAGTATAATTCAAAACAAATATTTTATGCCCCTTAGAAGATGACATTTATGTAAAACTTTTAAAGTTCAATAGCAAGCACCTCAAAAAATAAATTTCATCAAAATACTTAAAAGTTAAAGACTAGCCAAAAACCAGTCAATGTACTTTATGTTTTAGTTAATATATCTAAAATTACTACTAATGCCATATGGTGAGCGTAGATCAAATAATGATATTCAAAAATATAAGGAGCAAGTAGTCCATGCTTAATACAACAAAACACACGAGTTTTATAAGATGGCACTAAAAATACTTTTTTCTCCGAGCGAAAGCAAGAGCACATTTGCAGGGGATAGCTACATACGAAAAGAAAATTTCACCTTTGCTAAGCTCTTTCATCTAAGGCTTGAAATTTTAAAAAAATACGCTTCATTCGTAAAAACGGCAAGCGATAAGGAGCTTTGCAAGCTTTTTGGTTTTAAAAATTTAGATACCGACGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTATTCCGTTGGAATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 47831-49043 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWY01000009.1 Campylobacter curvus strain SS119296 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47831 30 100.0 35 .............................. TTTTTGTTCTCAAACATATCGTTTGGTAAATTTAG 47896 30 100.0 35 .............................. CGAAGCTGTCGCCGATCTTTGAAAGAGCTCTTGCT 47961 30 100.0 36 .............................. TTTAGCACATCCCACGCTCTAAATTTTATCTCTTTC 48027 30 100.0 34 .............................. TTTTGGCTATGGATATTGAATCCTGTATATTTCG 48091 30 100.0 36 .............................. TATGGGAAAAGCAGACGATGGGGCGCTCGAGTTTGA 48157 30 100.0 35 .............................. CGCATAATGGTGATTTTCTAGGCGATACGTGGGAA 48222 30 100.0 35 .............................. CCCGAACTTCGGGAGGAATACAAAGAGCTTCTATC 48287 30 100.0 35 .............................. GTGCATGAGAATGAAAATTTTGACGCGATAGTGCA 48352 30 100.0 36 .............................. CATTGCAATGCGCCAAAAAATTCATCTGCGCTCATA 48418 30 100.0 35 .............................. AACTTACTAAAAACATTTTTTAGCAATGAATTAGC 48483 30 100.0 37 .............................. AGTGACGATGAGCTGGGAGAGCTTGAAAGCTGGGTAA 48550 30 100.0 36 .............................. ATGCAAAAAATCAAAACAACAACAGATACCTTACAA 48616 30 100.0 36 .............................. GTCGAGGGCAAGAGCGACATAATAAACGGCACCGAT 48682 30 100.0 36 .............................. GCGGTCAGCCAACGATCGAGTGGCTGGATAATAACG 48748 30 100.0 36 .............................. CTTTTCCTCCACTCCCACGGCGGGATAGGCTCTTTA 48814 30 100.0 37 .............................. CCCGCATAGAGGCGTCTCAAAACGAGATTAAAACGGC 48881 30 100.0 36 .............................. AAAAGGCTTATAGTTTTAAGCAAAAACGAATTCAAA 48947 30 100.0 37 .............................. AATTTATTAAAATGTTTACATAACATCAGGAGTTTGT 49014 30 96.7 0 .........T.................... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.8 36 ATTAAAGATCATTCCGTTGGAATTTGAAAC # Left flank : AAGAGGAGATATTTGGTCCTGTAGGTGTCGTCATCAAATTTAAAAACGAAGAAGAGCTTTTAAAGATGGTAAACGACAGCGAATACGGCCTAGGCGGCGGGATCTTCACTCAAGACATCACAAAAGCCTTACGCGTGGCTCGCTCAATGGAGACCGGACGTGTTTGGATAAATACCTACAATCAAATCCCTGCCGGTAGCCCATTTGGCGGCTACAAAAACTCAGGCATCGGCCGCGAGACGCACAAGATCATCTTAGAGCACTACACTCAGATGAAAAATATCATGATAGACCTGACCGGCAAACCAAGCGGCTTTTATAAACAATGATTTAGGGGGATACACCCCCTAAATTTCAGACGTTGAAGCGCTTTTTAAGCTTTTGATAATGCTAAAATATCGATATTTGAATCATCATAAAATTTAAATATTAGCTGATTTTAAGGAACAAAAACATAGGGCTTGACTTTTAATAGGCTTAAATTTTCATATTTATGCGCT # Right flank : CCGCAGGTTAAAAATTGATAAAATTTAGAATTTCTAGCGCAATCAAATCTTATAAAACGACGCTATCGCCATCGCTCTGCTTGCAGTTGCGAGCATGGCGAAGCAAAAATCGTGCTACATGTCTGGCGTCTTGCGGAGCGTATAAGATTCGTGAAGCGTTTGCAAAAAATATCAACACTTTTTTAAAATAGAGCCACTCATTTAGACTCAGACACCCGCAAATCCCGCAGGGTACGCTCCCTCAATACTAAAGGCTATATCAATAAAAATCGCAAATTCCAGCCTACGCTACCACCCCATCCTCATAAATTTTCACGATCTTTTTATGCACCATCAGCGAAACATACATTATCGCTCCGCCAATAAGCAGCCTCAAAAGATCCGCGTCTTTATGCCAGATCACTAAATTTACGATGATGGCGGCCGGGATGAGCGCGTTGTTCATGATGGCAAGCACGCCGCTATCGACCTCGCAAGCGCCTTTGTTCCATAGATAATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGATCATTCCGTTGGAATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //