Array 1 146518-145109 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDOH01000005.1 Acinetobacter baumannii strain Acb1 NODE_5_length_211685_cov_30.7379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146517 28 100.0 32 ............................ AACAAAATGTGCTCTTGCTGTTTGACGTGATA 146457 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 146397 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 146337 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 146277 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 146217 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 146157 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 146097 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 146037 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 145977 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 145916 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 145856 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 145796 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 145736 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 145676 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 145616 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 145556 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 145496 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 145436 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 145376 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 145316 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 145256 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 145196 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 145135 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 151608-153495 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDOH01000005.1 Acinetobacter baumannii strain Acb1 NODE_5_length_211685_cov_30.7379, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 151608 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 151668 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 151728 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 151788 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 151848 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 151908 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 151968 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 152028 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 152088 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 152148 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 152207 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 152267 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 152327 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 152387 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 152447 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 152507 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 152567 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 152627 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 152687 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 152747 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 152807 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 152867 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 152927 29 82.8 31 ..CGC........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 152987 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 153047 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 153107 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 153167 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 153227 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 153287 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 153347 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 153407 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 153466 29 82.8 0 .G..C...................AT..T | G [153470] ========== ====== ====== ====== ============================= =============================== ================== 32 29 92.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGTCAATTGAACAAACCCAATAAGCCACTGTTTTATATAACTTAAAATTTATTTAAAAATCCCAGTGTACATCACAGTGTACAAATTATATGTTGCTAGGCCATTTTCTCTAAGTTTAGTTGCTATATCGGGAGTTACATTCATATAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATCACCCAACGGAAATTTT # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //