Array 1 53-631 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYI01000009.1 Parasaccharibacter apium strain B8 B8_c9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53 29 100.0 32 ............................. CCATGCAACGAGCCGCTCCAGAAGGTCCATGC 114 29 100.0 32 ............................. TGGCTCAGAAAATCGGGGTCCAGTCTGTGGCG 175 29 100.0 32 ............................. TCAGGGCGGCGGCTGGGGACGGTGTTCTGGTT 236 29 100.0 32 ............................. GCGTTGCGTGCTTCAAGGCCAGAACTGTTCGA 297 29 100.0 32 ............................. TCAAAAACAACCATCTCGCTTCAGGATTAGCT 358 29 100.0 32 ............................. CACCAATTCAGAATAGAGAAAAAAATCTGCCC 419 29 100.0 32 ............................. ACCGTGCCCGGATTTCCATTATCCGGCCAGAC 480 29 100.0 32 ............................. CTGGCCGTCATGGAGCGTATCCACGCCCTCGT 541 29 100.0 32 ............................. CCGGCGGACACAGAGGTTTACTTCCAGCATGA 602 29 93.1 0 ......................CA..... | T [629] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GCCTACGCGGGGATGAACCGCGGACTGCCAGACCCGCTATTGAGAAGGGTGCC # Right flank : GGTGCCAGACCGCCATCACTGGCCTGTACCGAACTGTTCGCCGGTGGGTCATGGGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGTGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGAGCGGGGTCGTGCGGCCATTGCTGGTTGACCAGCGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11082-10260 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYI01000019.1 Parasaccharibacter apium strain B8 B8_c19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11081 29 100.0 32 ............................. AATTTTCGGAGACAAGCGGGGGAGCGTCAAAG 11020 29 100.0 32 ............................. CTATCTCGATAGGCTTTATCCCGCTCTAAAGC 10959 29 100.0 32 ............................. CCATCGGGGGGTACCCAAGAGGGGCGACGGTG 10898 29 100.0 32 ............................. TATCCGGTTGTCAGCGTGCCCTGCACGGCGGG 10837 29 100.0 32 ............................. CTTGTGCCTGCTTGTTGCCTGCCGTCTTGGGA 10776 29 100.0 32 ............................. GCCCAGAGGATCCGTCAATATCTCAGCGCCGT 10715 29 100.0 32 ............................. CTGCTTGACGGACATGGCCAGCGATTTTTGTA 10654 29 100.0 32 ............................. CATTACCTATTTCGTGAGACCTGGAATACCAG 10593 29 100.0 32 ............................. ACGACGGCGAGGTGCGCCTGGATCGCCTGAAC 10532 29 100.0 32 ............................. GCGGCGATTACTGGGCCGTTTCTGGACAGGCG 10471 29 100.0 32 ............................. AACACTGGCAGCAACGGGCAGACGGGCCCGGG 10410 29 100.0 32 ............................. GCCCTGGGCTTCCCGAAAGCCACCATGACACC 10349 29 100.0 32 ............................. ACCTTTTTTGATGCTCTGGCCCAGTTTCGCCA 10288 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGTCTGCCTCGTCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGCGCCACCCCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTCTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGGTCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACGGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAGGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : TCTTCATGAAAGACTCCCTGGGAACAGCTGGGGATCAGGGGAAAGTCCTTAAAAAACTTGAGGAACAGCGCAAAGAGGCCAACATCCTCATATTGAGGATGCCGGGGTATAAATCAAGCGAAGTCACCCTATCCGGCTACGAGTTCGACCGCACATCTCAATCAGGGTGCGATCTTCTGGTCGTCCGAATGACTTTGCAGGAAGTGCGTTTCGGGGCGAAAAAACGGGTGGTAATGAAAAATTGGACACCTGTTGAAGCCGACAATATGGGGAATAAAATCCCCCAGAAAATTAGCGGTTAATTATTCATCCCCTAGCGTGAAATCAACCTCTGCTGTCCCGATACCATAGTTATTGATCTTTATGTCAAAATCTTCTGATGACCAGCACTTTGCGGTGACAAAATCCTTAGCTGATTTAATTATGTCATCACCAGTACCTTTTGGAGAAGAAAAATGGCATGAATCTGCCCGCCAGTAATTATCATTACCTTTCTGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79-708 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYI01000029.1 Parasaccharibacter apium strain B8 B8_rep_c61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 79 36 100.0 30 .................................... TTTTGCGGCGTTTACCCTCACGTTCCCCAT 145 36 100.0 30 .................................... TTCCTGCCGCCTGCGGGCGGTTTTTTTGTG 211 36 100.0 30 .................................... ATGTCATGAAGCCACGCAGCCGCCTTGCGC 277 36 100.0 30 .................................... TCGATCCGGCGGCCGGAGAGCGGGGTGGGG 343 36 100.0 30 .................................... AATGAAATAGTTTCGTCCGTGAGAACATAA 409 36 100.0 30 .................................... CCCGTGAATCTTCCCCATTCGAGACAGGAA 475 36 97.2 30 ..................................A. CGTAGTTCCTGCCGACCCTCATCAGGTAAT 541 36 100.0 30 .................................... CGATCAGTCCGGTCCCCAAATCCTTTTTGG 607 36 100.0 30 .................................... TCCTTTTTAGGGTGGGGAACTGTGACAGAA 673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Left flank : AAACAGATGGTGTTGCTATGATTTTCGATCGTAAAAACAATAAAAAATCATGCAACATCAATCTGTTACGCAAGAGCTA # Right flank : CCTTCCGCCGTGAAGCCCTTAGAGCAATCGAACCTACCATAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 884-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYI01000018.1 Parasaccharibacter apium strain B8 B8_c18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 883 29 100.0 32 ............................. TGTATTCAAAAAAAGCGGCGCAGGCTCCTAAA 822 29 100.0 32 ............................. TTCGCCGGGTATACAATCAGATTCTTCAGCAG 761 29 100.0 32 ............................. GCATGGGGTACAACCCCGACAATATCCCCTAC 700 29 100.0 32 ............................. AGGACCCTTCCACTCTACATTGTGCAGGGCAA 639 29 100.0 32 ............................. ATGCCACGACAAGCAGTTCTGGTGGGAATATC 578 29 100.0 32 ............................. GCGGCTTTGATGAGAAAATTATTAACTTACCT 517 29 96.6 32 .............G............... CTCTGGTATCCTATAGGGGAACTACGGGTTGC 456 29 100.0 32 ............................. CAGTACAATGGCAGATACGCCGGAGAAACGGA 395 29 100.0 32 ............................. GACTGCGCCTCCTCAACCCACGCCACGTCAAA 334 29 100.0 32 ............................. GAGATCAGGCGGTCAATTTTTTTCTCAGGGAT 273 29 100.0 32 ............................. CTCAACAGATTTAAAAAGGTGCAGGGAGAAAC 212 29 100.0 32 ............................. GCCAGCGCAGCTGCGGGGACGACTGTTGCGGC 151 29 100.0 32 ............................. CGGACTGCCAGACCCGCTATTGAGAAGGGTGC 90 29 100.0 32 ............................. CCATGCAACGAGCCGCTCCAGAAGGTCCATGC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TCGTGTACTGCATGGCCCTCCTGCTGGAGCTGCTGCGGGGCAGGAATGAAAAAGGCGAGAAAATTGCGCTTCAGGAGCCGTTCCTGACGGCAGAACAGTTGAACATTGCTGCCTCTGACGATTTTGAGGCTTCCATCGGTCTGCCTGCTTTCGACAGTTGGCGTGATCTTCTGACCCCAGAGATTAAGCAGGAGATTGTGCGTGATCGGGAGCTGATCCGTCAGAAGGGTGTTCTGGCCAGCCTGCCCGTGTGATGAGGCGATGATCCGTTGAAAATTGATTGTGTGTAGAGAAAGGGAGGCTCCGGCCTCCCTTTTTCATGTTTGCTGTCAATCTTGTGGATAAAATTTGCTGGAGTGGTTTTTGGCTGTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAGT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //