Array 1 408-1755 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBG01000083.1 Pseudomonas aeruginosa strain Env_1 contig-2000068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408 28 100.0 32 ............................ GGGCATTCTCCGGCAGCGACCCGATGTTGCTC 468 28 100.0 32 ............................ TTCGCGGGGCTTCGTCGTTCCCGCCGCTCCGA 528 28 100.0 32 ............................ ATCAGCCGGAATCGGATATTGATGAGGAATCC 588 28 100.0 32 ............................ TTGTCCATGCGAAGAGAATCAAGCTCCGCAGC 648 28 100.0 32 ............................ CGGAGGATATTCGTCGCGCCGCCGGCGGGCGC 708 28 100.0 32 ............................ TGTTCACCTTGGAATGGAGCCAAGTGGTGGAC 768 28 100.0 32 ............................ AACCGCAGAATCGCCACGCAACGATGCCCGTT 828 28 100.0 32 ............................ ATCGGGGAGCTTGGTGATCGACATTAGACGGC 888 28 100.0 32 ............................ TTTCAGACGTTCCGGCGTCAGCGCCTGAGCCT 948 28 100.0 32 ............................ TGGAACTCAGGTTCTACGGTGTTCGAACTCCA 1008 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 1068 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 1128 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 1188 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1248 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1308 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1368 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 1428 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1488 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1548 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1608 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1668 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1728 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37581-38807 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBG01000082.1 Pseudomonas aeruginosa strain Env_1 contig-1000068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37581 28 100.0 32 ............................ GGAGGACCAACCGTGGACAACGACAACGAAAC 37641 28 100.0 32 ............................ AAGATATGCATCCGGTTCCGCCGGAAGTCGGG 37701 28 100.0 32 ............................ TGGCGATATGGCCCAGACCCATAAATTGATGC 37761 28 100.0 32 ............................ ATCAATAGGGGCAATCGGGGCGGGAGCTTTGG 37821 28 100.0 32 ............................ TTGGTGAGCGTCACAGGCTGGGTCACAGCCTC 37881 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 37941 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 38001 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 38061 28 100.0 32 ............................ GAAACAGGCGCTGTGGGCGATGAGTCCAAAGC 38121 28 100.0 32 ............................ TCGTAGGTTTCTTCGTCGTAGCGCGACTTGAT 38181 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 38241 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 38301 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 38361 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 38421 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 38482 28 100.0 32 ............................ TGATAACCATGCTCAAACCACGCCTGGGCGCT 38542 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 38602 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 38662 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38721 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38780 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48733-47685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBG01000082.1 Pseudomonas aeruginosa strain Env_1 contig-1000068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48732 28 100.0 32 ............................ TTGCTCAGAACGATGGTCAGCGAAAAGCGTTG 48672 28 100.0 32 ............................ CAGCAACGCCGCTACCGAGAGGCTCGCCACGA 48612 28 100.0 32 ............................ TTGACCCGAGGCTGCACACTCTCAGCCGTCCA 48552 28 100.0 32 ............................ AACAACAGCCCGTATCCAGTGCGCGTAACAAC 48492 28 100.0 32 ............................ AGGCCCAGCGTGCGAAGTCGAAGCCGGCATTG 48432 28 100.0 32 ............................ ACATCTCGGCTTGCTCATCACGCAGCTTTTCG 48372 28 100.0 32 ............................ TTGAATGCGGAAGGTGCGGTCAGCCACAGCAC 48312 28 100.0 32 ............................ GCCGAGGCGACTTGGAACTGGCCCAACGCATC 48252 28 100.0 32 ............................ CGCGAGGAACGGCGTGCGCTTCTTGACCGCGC 48192 28 100.0 32 ............................ TGACGGTTCCACCGAACTGCACGGCATCAGCA 48132 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 48072 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 48012 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 47952 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 47892 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 47832 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 47772 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 47712 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGACCCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //