Array 1 66361-67237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOG01000001.1 Lactobacillus delbrueckii strain 328M NODE_5_length_99434_cov_50.125575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 66361 36 100.0 30 .................................... GATCAAGCAGGAGGAAAAGTACAGGGATGA 66427 36 100.0 30 .................................... CAGGAGTTCTCGCGCTTGTCCCAGCCGTGA 66493 36 100.0 30 .................................... GTCAACCAGTGAGACAGAAGCAGTTGAGTC 66559 36 100.0 31 .................................... CATGCAACTGGCAATGCCGCTAAGACCTTGC 66626 36 100.0 30 .................................... TGTCGGCTGGTAACTTGCTACGTCTACGCC 66692 36 100.0 30 .................................... TCTATAAAAAGTCGGTTAAAAGCACTAGTA 66758 36 100.0 30 .................................... CAGCCTTGAGCGTGTCCAAAGAGTAATTGA 66824 36 100.0 30 .................................... GTTGGCTTTTTTGGCAACAGCATCATCTGT 66890 36 100.0 30 .................................... CAAAACCCCAGCAAAAGCACACGTTCGAAA 66956 36 100.0 30 .................................... GCTTTTGGATTTCACCCGACGGGGTCCTTT 67022 36 97.2 144 ...................................G CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 67202 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 12 36 97.7 41 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCAATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTATTTAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGTAGAACAGTTTAACGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAGGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCATCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 26052-24699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOG01000007.1 Lactobacillus delbrueckii strain 328M NODE_22_length_27767_cov_50.217471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 26051 36 97.2 37 .C.................................. AAGAGCTGAATTTTTGGCGGGTTGATTGGGCTTATGC 25978 36 97.2 40 ...................A................ ACAAAGTGGGCTCAGGACATCATATCTACGATGTCTTGGA 25902 36 97.2 36 ....................A............... AGTTGAGTCAAGCAAATCACCGGCAGGGGCTATCCG 25830 36 100.0 36 .................................... TCAACCGAAGAATTTCTTCATCTATGGAAAAACAAT 25758 36 100.0 36 .................................... TCTTGAGAGTTGCGGATCGAAAAACTTAAACCCTTT 25686 36 100.0 35 .................................... GTTCGACAACTTGTGGATTAATGACTTATACACCG 25615 36 100.0 37 .................................... TAAAAATAAATAAAAAGGAGAAACAAAAATGGAGAAA 25542 36 100.0 38 .................................... AATGGACTAAAACAGATGAAAAAGTAAGTGATGTTATT 25468 36 100.0 36 .................................... AAAAAAGTTCAAAAAAGGGGTTTGCAAGTAGCCCAA 25396 36 100.0 39 .................................... ATCTTTCACGGTTGCGGATGCTTCAGACTCTGAGAGCTT 25321 36 100.0 36 .................................... GTTATTAAGAAATCAATTCGTAATGGAATTAATGAA 25249 36 100.0 38 .................................... GAGAAGAAATTAAGGAGGATTTATGATTAGCTCAGAGA 25175 36 100.0 38 .................................... TGATACAATATAATCAATCGAGCAGTAGCTCAACGGCA 25101 36 100.0 36 .................................... CTGATGGTCAAATTCAAAGCGTGGAAGCTCACTATT 25029 36 100.0 35 .................................... AGAGTAGTTTTAGATAATAGAGGAGACAAAAAAAT 24958 36 100.0 38 .................................... ACGAAGTTAAAAGGAGGATTGCTATTATGATCAGTAGT 24884 36 100.0 35 .................................... GTAAGCTTGTCTTCTTTAAATCGTCAGATTGCATT 24813 36 100.0 43 .................................... AAGAAAAAGCAAAAAAAAATAGAAAAAGGGGTATACAACCCTG 24734 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 19 36 99.6 37 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : GTTTTGAAAATATATTACGCCTTCACACTCTTAAAGGCAAAGTAGTGGCCTTCTGGGTTCGCAAAATTGCAAGTTTTGGCACTGCCCATATCAACGACTTCACCAACAGTGACGCCCTTGTCCAGCAGCTTTTGGCGAGTTGCCTTTACGTCTTAGCAATTGAAAAGCAGTGACGGGGTAGCCAGGTCAAGTTCTGGTGAGTACTTGGCAATTACTTCCCGGTCAAACAGGCGCAGGCTGCTTTCCGCGTTTTCGCTGGCTGCCAGCAAGTAGGTCTTGCTTTGGTCTGGGCCGTCGCCTTCTTCTTTCACGATAAATGCTAATTTCCCAGGATTTTACAACTCAAGCCATACGGCTGACAGATTTTCTGCCAGCCGTATTTCTTTTATGCATGACTTTCCAGAAATGCGAGGATCTCAGCTTTAGTTCGGGTACTTTTATCAATATCGTAAAGCTAGCAAGGAGGAACTTTAAAAATGAAGGATGTTGTTGTAGATTTT # Right flank : AGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACTTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAATTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //