Array 1 162322-163133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEMX010000003.1 Serratia ureilytica strain ILBB 145 145_(trimm)_contig_3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162322 28 100.0 32 ............................ ACCAGCGCCGAAGCCTTCCAACGTTCGACAGA 162382 28 100.0 32 ............................ TCGAACCTTTCGATAACGCAATGGCGGATATT 162442 28 100.0 32 ............................ CTACACCGATAAAAACGGACACCTGGATTCAA 162502 28 100.0 32 ............................ TTCAGCAAACCAGCGGTAGCCGTTTGAATCCA 162562 28 100.0 32 ............................ AGAACCTTGTTTTTTGAACGGAATGGCGCTAC 162622 28 100.0 32 ............................ AATAACAACAGTGCCAGGTAATGACCAGCTAA 162682 28 100.0 32 ............................ AAACTGTGGGGCGTGTTCCGATCTGCGTTTGC 162742 28 100.0 33 ............................ CAGCAGCCCCATCAATCCCGTCCCCAGGCGACC 162803 28 100.0 32 ............................ AACAACCGGAGCCAATCATGGCAATTACAGAA 162863 28 100.0 32 ............................ AATGAAAGGAGACATGCTGACCGGCAATCCGA 162923 28 96.4 32 ....................T....... GGGAGGCGCAGCCGGTGGCGGCAAATGCTCAA 162983 28 100.0 32 ............................ AAAATCCATCAGGTTGCTGTTCGAGCTGGTGA 163043 28 100.0 32 ............................ TTGCCACGGGTGCGGAACAATTGCCCGTCGAT 163103 28 96.4 0 ....................A....... | A,A,G [163123,163126,163129] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCTGCGCCGTTTAATCGCTTTTAACGGCCGGCAATAGAGACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTCTGCGTCGCAGTGAGACGGATGGTGATACCAAAGAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCCATTCTTGATTGCTGAACCCTTTTTTGAATGTCAATTTTAATTTATTGATTTAAAACAATATTATTAAACGCTTTAAAAAAGGCTTTTTGAACGGGTATTCCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATACAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGTAAAAACGTGGTAGAACGTTGGTGTTGCCTGCATTGATATGCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATAAAACAATGAAGAATGTCCTTTCCTCCTCTGAATTAAAAACGATATTGCATTCGAAGCGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGGGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACGCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 171610-173436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEMX010000003.1 Serratia ureilytica strain ILBB 145 145_(trimm)_contig_3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171610 28 100.0 32 ............................ GAAAGAGATCCGCACCGAAGTGGTTAAGCCGG 171670 28 100.0 32 ............................ AGGTTAAAGCGGCGCTGGCCAATGGCGATTAC 171730 28 100.0 32 ............................ TGCTAGGTAACACAGTCTTATTCCTTGTCGGG 171790 28 100.0 32 ............................ CTGATTTTCAGGACACCAAATGGAACGGTTGC 171850 28 100.0 32 ............................ CGGAAGTTGCAGCTTTCGAGGCGTGATAGTGA 171910 28 100.0 32 ............................ TTTGGTCATCACGTCCGCGACGCGCTGGATCT 171970 28 100.0 32 ............................ TCATTGAGAACGAAGTCATGAGTTGTTGAAGT 172030 28 100.0 32 ............................ GTAAGCATGTGAGACACAAACAATCCATCGTC 172090 28 100.0 32 ............................ TAAGCACGACCTAGTCTCCTCCATGATTCTCG 172150 28 100.0 32 ............................ GAAAATATGAAACCACGAATTCCGCAACGAAT 172210 28 100.0 32 ............................ GAAAATATGAAACCACGAATTCCGCAACGAAT 172270 28 100.0 32 ............................ CGTTGGTCGGCGACAAGCCCGATTTTAAAACC 172330 28 100.0 32 ............................ TGGAGCGCGTCGGCCCCAACGGCTGGCAGGGC 172390 28 100.0 32 ............................ ATTGCTCTACGCCATACCAAGTATGACTACAT 172450 28 100.0 32 ............................ TGCTGGCCAACCTGGAAAACGAGCTGATAACG 172510 28 100.0 32 ............................ ATTGCCTGCACCTGGAGGTGCAGACTGTCCCA 172570 28 100.0 32 ............................ TTCCAGCCCCAAAACACCCTGGGTCTGTTCGT 172630 28 100.0 32 ............................ TCTCGGGTCATACTCAGTTGCTGGGCGAGTAC 172690 28 100.0 32 ............................ ACAACGTCTGGCAGTTTTTCTTCCGGGCAGTC 172750 28 100.0 32 ............................ CAATCCATGAAGCATGTTCGCATGTCATTTGG 172810 28 100.0 32 ............................ TGGGAACATGCGCGTTATCGGCTGCACCTTCA 172870 28 96.4 32 ............G............... GATCGAGGATGAAACCGGCGCCGTCGACTGGC 172930 28 96.4 31 ...........C................ TTTAAAAGGCATAAACTATACTCCCTGCATA 172989 28 100.0 32 ............................ GGTGATTGTGATTGAGTCCTACATCATCGCGA 173049 28 96.4 32 ....................T....... AGTCGATGCACTCGGCGGCGGTGCGGTATGGC 173109 28 96.4 32 .................T.......... TTGTCGCCGATCCAGTTGAATACTGGCATCAA 173169 28 100.0 33 ............................ ACTCGTACCAGCCATCTGCCATCACTAGCGCGC 173230 28 96.4 32 .........T.................. GACGAGAGATAAATCAACCACCCAGGAAGGAG 173290 28 100.0 32 ............................ GGTGGAGGTCACCCGTTTGAAATGAACCCCTT 173350 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 173410 27 82.1 0 ............CC......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGTAGCGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCATGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCCTTTATTGCCTTGAAAAGTCTTTCCACCGGACAACATTTTCGCTTGTTCGTGAAACTGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGTTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACGCATTGATTTTGTTGCCTCTGAAAGGTATCTGAAAAATTAGGGGTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTCGTTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCACGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACAATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //