Array 1 94362-95214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVR010000068.1 Cohnella xylanilytica strain DSM 25239 contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 94362 33 100.0 33 ................................. TTGTTGTATAATCGTTGAAACCCTCGAAAGATA 94428 33 100.0 37 ................................. GCGAATGGGGCATAGCAAGCACGATGGATGAGGAAGC 94498 33 100.0 35 ................................. ATACTCACCAAAGCTATGACAGGACAGCAAGCGAA 94566 33 100.0 33 ................................. TATCCCGTTACAAAGAGAAAGGAGATAGAACCG 94632 33 100.0 35 ................................. ACTGGAATGAGAAAGGGAGGATAACGATGCCAATC 94700 33 100.0 34 ................................. TGCGTATAAAATCGGTCCATCAAAGTCCGAAATA 94767 33 100.0 37 ................................. CGTCCAGATCTGGGCGGCGCAAACGCGTTGACGAAGC 94837 33 100.0 35 ................................. ACCACAGGGAATTTATTCCGTCAACATATTTTGTG 94905 33 100.0 39 ................................. AAACAGTGGGGCGAATGGCGGCAGACGCACGACCTGAGA 94977 33 100.0 34 ................................. CGCATCGGTGAAACGAAACGAATCTACGCTTTGC 95044 33 100.0 35 ................................. CTGGCGGGCTTTTATATTGGCGACGAGAGCCTCCT 95112 33 100.0 37 ................................. TGAGCCTCAAAGACCAAGCAGAAGCACCGGGAGTTAC 95182 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 13 33 100.0 35 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : AGAGGCAGACGGCGGCCGACCTAACGGGCATTCGCCGGGAGTTCTGGGGCGATGAGGCCCCGTTGCCGTACACGGTCGTCTTTGGCCATACGCCGACGTTCAAGATGGGCGCCGAGCCCGGCGAGCTCTGGTTCGGCCGCGACCGGATCGGCATCGACACCGGCGCCAAGCATGGTTGCCGGCTGACGCTCGTCGACCTGACCAACCGGCTCAGCTATTCGTGCTCGACAGGGGCCGCCGAACGGTACTCCGACTTTCGGCAAAGTTCTTGGGGGTAGAATCAGGCGTTTAAAGGTGCATTTACAAGAAGAAGGGGTCATTCGAAAAAAGGTGCGAATGTGAAGCTCACATGATTTTCCGGGGACATTCGCACCGAAATAAAAGAGGTCTTTACCTATCACGCCTTCGTTTTGTATGATTTTGGTAGAGGTTCTTGAAGCTTTAGCTAGTTTTTAGGCTATAAAAAGGCATATTTGGGCCTGTAGTAGCTAAAAAACGCT # Right flank : TGCCAAGCGGCAAACATGAACGGCTGCAAAGTATTGACGATCCCGCCGGGATGCGAGGATTGAGAGTTTTTTCTTTCCCAGAATAGGATCGTAAAGAATGGACACTTCACTAAGTGCCTCTCTTATGAGCCCTCTTTTTTGATTATCATAAAAGCCACTCTTTTTAGTATATTTACCTCAGATTATCCAACCGTTTGCGAAAATGGAGGACTAATATGGAATACGTTGCGCACGTTCGCGAAAGCGATAGAAAGGTGCAAAGCGTCAAAACTCATTTGCTGGAAGTTCGGGAGCTGGCGGAAATTTACGGTGCCAAAATCGGAGTAAAACATATCGCAGGGCTTGCGGGTGTGCTACACGATCTTGGCAAGTACACGACAACCTTTCAAGACTACATTTGGGAAGCCGTAAACAATCCTGATTCTCCTCCGAAAAGAGGAAGCGTGGATCATTCCACTGCCGGGGGAAAGCTGCTGTATGAACGATATCATCAGGGCCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.60,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73010-71761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVR010000085.1 Cohnella xylanilytica strain DSM 25239 contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 73009 33 100.0 35 ................................. CGTATAGATGGGCAGTTTATACGGTCGACGTACCC 72941 33 100.0 34 ................................. AATCAATCAGCTAGACGATCCGCGAGATATCTAC 72874 33 100.0 36 ................................. TGGTGTATCTGTGACAAAGTACGAATCATGGTTGCC 72805 33 100.0 35 ................................. ATTCTCAATCTCCAACAATTCGCCTATGGGTTAAA 72737 33 100.0 34 ................................. ACGGAGGATACCCTTGCCAGCCTTACAGTATTGC 72670 33 100.0 32 ................................. ATCCCTATCGTCGTATGGCGTCAGGCTGCCGA 72605 33 100.0 34 ................................. ATCGAGTTGCCAACGATTGTCTTAGAGCCTCCGA 72538 33 100.0 33 ................................. GGTTTGGTCTTGGCGAGCGCGATCGATGCCATC 72472 33 100.0 36 ................................. AAACTGAAAGCGATTATGTTCGTATTGAATATCTGC 72403 33 100.0 35 ................................. TCTAGCCATACTCCGTTGTCCATGAAGATTTCTGC 72335 33 97.0 33 ..........A...................... CGGCAGGGGAGCTGGCCGGAAGTGGTCGTCTGG 72269 33 100.0 36 ................................. CGGTTTAAGTGGAATCCAGTACCATTCGAGCTTCTT 72200 33 100.0 35 ................................. CTCGAGGATCTCGACGAGATCATCATCGATCCAGT 72132 33 100.0 34 ................................. ATAGGTCGTAACCGGCATGAGGAGCACCCCCTAG 72065 33 100.0 34 ................................. AGATTAAGGCTTATTACAACGCTACCGGCGTAAT 71998 33 100.0 36 ................................. ATCGGTCGCAAGCTGCCGATATTCCTTTGCGAGATC 71929 33 100.0 35 ................................. AAGCTGCTGGACTTGACGGTGGTCTGTTGTACGGC 71861 33 100.0 35 ................................. AAGAATGACGATGACATGCTGAGGTTTGCCGAGCG 71793 32 90.9 0 ...........A.-..................A | C [71764] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : GCCTTTTCTGTGGAAGTAGGTGAATGGATTGCTCGTATTGATTACGTACGACGTGAGCACCGTTACCACTGCGGGACAAAGAAGATTGCGATTGGTATCGAAAGCTTGTCAGGCCTACGGCCAACGTGTTCAAAATTCCGTGTTTGAGTGCGTAGTTGATGCCACGCAATTTAAGCTTCTTAAACTCAAATTGCTTGACATTATCGACGAAGAACAGGATAGCCTCAGATTCTACCGCCTCGGCAATGACTACAAGGGAAAGATTGAGCACGTAGGTGTGAAGGAGTCCCTTGATATGGAAGGACCTTTGATTTTGTAGTGCGAATATCCGGTGCGAATGTGAAGCTCACATGATTTTCCCGGGACATTCGCACCGAAAAAAGAGGCTTTAACTCTTTGGAAGTTGCATTTATGTTTCTGTTAATTTTGGAATTTGTTTGTTTTAGAGTGCTATTCCTTCTGAATGGGATCTTTCGGACCCATTCAGAAGGAGAATCGCT # Right flank : AAAGGCCGACTCTATTGAGCCGGCCGTTCCATCCTCACAAGGATGCATGTATGGATTCCTCAAGCCATTGCCACCCAATTTACCCCTGCCCGATCGCCTTAAACGAAGCCTCGGCCGCTTCCAGCGTGGCGTCGATGTCTGCGTCGGTGTGCGCGGTCGTCAGGAACCAAGCCTCGTACTTCGACGGCGCGAGGTAGACGCCGCGCTCCAGCATCTCGCGGAAAAAGCGGGCGAACAGCTCGCCGTCCGTATCCTGCGCCTCGTCGTAGTTCGTGACCGGGTGGTCGCAGAAATGGGTCGAGAACGCGCCGACGATGCGGTTGATCGTGAGCGGCACGCCGTACCGCGCGGCCGACTCGGCCAAGCCGCCCGTCAGCCGCGTCGCCAGCGACTCCATGCGCGCGTACACGCCCGGCTCGCGCAGCACCTCGAGGCAAGCGATGCCCGCGGCGACGGAGGCGGGATTGCCCGCCATCGTGCCGGCCTGGTAGGCGGGCCCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1794-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVR010000083.1 Cohnella xylanilytica strain DSM 25239 contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1793 32 100.0 35 ................................ AACAGCTTGCAAGCGGCCCGATCTGGACTAAAGAG 1726 32 100.0 35 ................................ GCGGTCGCACCAACATCATATAGCCTGATCCCAAG 1659 32 100.0 33 ................................ TACTGGTTGGATATTGTCTGATTCGATAACATC 1594 32 100.0 33 ................................ TGCCTAATGCCATTAATAACATGTCGAATTCGG 1529 32 100.0 34 ................................ TCTAAGTCCGTTAGTTGATCCCAAATATCGGCAA 1463 32 100.0 33 ................................ TCTAGCGGCTGCAATGCAATCCCGAGCTTCCTG 1398 32 100.0 34 ................................ CGTGGGCGTCCGCGATCTTGTACCAATCCTTATA 1332 32 100.0 37 ................................ TTCATGCCTCTGTCGCCTCCTATACGCCTCGTAGAGA 1263 32 100.0 38 ................................ CGTACTCGTTCCTGCCACTCTGTAAGCTCGCTCTGAGC 1193 32 100.0 36 ................................ TCGCCGATCCAGCCGGACACCGAACTATGGCAACGG 1125 32 100.0 34 ................................ TGGCGCATCACGTTTTGAACGAGTGCGCCGGAAT 1059 32 100.0 36 ................................ TCGAGTGGCTCCACGATCTGCCGAAGCCCGACGCTC 991 32 96.9 36 ......C......................... AGCTATGACCCGAACAGCGATTCGCAATACCAGGCG 923 32 93.8 38 ......C............T............ CAATAACCCCACATGTCCATGCCGTAAATGCGTACGGC 853 32 93.8 37 ......C............T............ GCCTCCGATCAGGCCGAAAACGCGCCGCACGAAGATA 784 32 90.6 33 ......C....C..A................. ATTGCCCGGCAGCGGATTGAGCAGAACAGCAAA 719 32 93.8 37 ......C....C.................... TGGAGAAAAGAATCATTACGGCCGGCCTTACCGAAGG 650 32 93.8 35 ......C....C.................... AGCGACGTGCCGGCGTCGGAACCCTTTAGGCCGTT 583 32 93.8 36 ......C....C.................... TTCAGGGTGGCGAGCTGCGTCAGCATCTGGTGGATC 515 32 96.9 34 ...........C.................... CTCACCCCGAGTTGAAGGGGATCTACTGGACGTG 449 32 93.8 35 ......C....C.................... CTGCGTCTCGAAGGCGGAGAGAGCGCTGACGTAGT 382 32 96.9 34 ......C......................... TTTCGCCAAGAGGCAAACATGGTCAGGCCGCAAA 316 30 81.2 0 .....C..T.-.-..........A......T. | ========== ====== ====== ====== ================================ ====================================== ================== 23 32 96.8 35 GTCGCTTCCCATGCGGGAGCGTGGATTGAAAT # Left flank : CGCGCATGGCTTTGTCTCGGCCCCTCTTGCGAATCAAACCGGTTTCTCAGAAATTGACCTGGAACTTCTGTGGGAATCGCTCGAAAATTTGTTTGAACATGATCGTTCCGCTGCCCGCGGACTAATGGGAACAAGAAAACTCATCATTTTTGAGCACTCGTCCAAGATGGGAAATATCTCGGTACAGAAGCTTTTTGACGCGGTTACTGTGAAACGGATTGATGAGAATAAGCCAGCTAGAGAATTCAGCGATTACATTATTGCAGTAGATCAAGAAATGATTCCTCCAAGTGTCAAACTGATTGAAAGGTAAATTGTATCGTTCATCCGTGGTGCGAATCCCAAGCGCACATGAATTTCCCGGGGGATTCGCACCACTTGATTTTACTGGGTTTGAGGGATTTTAACGAAAAAATGAGACGTTTTTGAGGACTATGTAACAGCGATTCGCGAAATCGGGCCCGCGAGCCCTTGTGGCACTAGGGCTTGCGGTGCCCGCT # Right flank : TAAAATTTTTATCACAACATTTTTTCTACGACTGCTCATTCTCTAACCATCCATATGGTTGAGAAAACGTAACGGACACTACGAACGTTTAGGTTAACGGACACATTGCGCTTATTTCGCAAATAACGCCTATATTGACCGTCTGTGGAGCCATTAAGGGCCGTGGTGACAGAAATTTTGCTAAGAACATGACACGGTTGAATAATTTTATAAAAGAAAGGGGCTCCTATACCGTAGTAAGTAACGACAACCCTACGGAAAGGTCTACTCGGTTCGGCCCCCTAATT # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCATGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8077-8841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVR010000083.1 Cohnella xylanilytica strain DSM 25239 contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8077 32 100.0 36 ................................ AAGCAACGATACGTACTCCAGCTCATCATTCAACAT 8145 32 100.0 32 ................................ TAAGGCTCAGGATCACCAAAATAGGTTACAAG 8209 32 100.0 36 ................................ CGTTCGAAGAAAGCGGCCCGGACGGCCGTCGACCGT 8277 32 100.0 36 ................................ CAGGAGCAGGCTTCGGCCGGCGTCCACGGACTTCTC 8345 32 100.0 35 ................................ AGAATGCACCAAGCATAACTAAGAGGTTGACTGGC 8412 32 96.9 35 ............A................... CGAGTCATCTCTCGCCTCGGCCAACTCCTTTTTAA 8479 32 100.0 38 ................................ GACCGAAAGGCGCAAATCATGTACGACCTGCTACGCAA 8549 32 100.0 33 ................................ ATCGCGGGGTTCGCTAGCAGCGAAGCCGCCAGC 8614 32 96.9 33 ........C....................... CATCAGTCATCCGCCCAATCTTCGCCGGCCGAA 8679 32 90.6 34 ........C..T.T.................. GCTAACGGCTTCCTAGCGGCGGCGGCCGCGGGCA 8745 32 90.6 33 ........C...........A..........C ACCTTCGACGGCTTTACGAGGAATATTTCGTCC 8810 32 78.1 0 .......TC.TA.T........A.T....... | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 96.1 35 GTCGCTCCTCACGCGGGAGCGTGGATTGAAAT # Left flank : TGCGAATGGTCCGATAAAGTATGAGGAGCCGCCCAACTGCCGTCATCGTTTTTACGTACATGCGCGATAAGTTCCGTAATCATGCCAACATGCTCTCCTTTTAGGAGCGTTCCTTGTAAAGTTCGACATAATTTTGGAAAAACCTTCATGATTCAATTAGATAATCGTTATTTTGGGCTCAAAAATGAAAAACAATCGTAAGCAACCAGGTAAATGTGACTAAAACTTAAGTCTTGTTGCCTGAGTATATAGTCGTAGACAAGGCTCGTTATATAGAGGTGAGAGACTTCAGATTTTCGACAAATTGCAAGCCTGGGTATGCTATGATAGTGGTGCGAACCCCAAGCGCACATGATTTTCCTGGGAGATTCGCACCTCTTGATTTTACTGGGTTGTCGGGAATTTTATAGAAATATGAATACTTTAACATGGTTACATCTTGGCGATTCGCGAAATTGGGCTCGCCAGCCCTTGTGGCACAAGGGCCCGTGCTACCCGCT # Right flank : TCGCTATTGCCCATTTCGGGTCCCCTTCTACTTTTTCTGTGGTTGCTGCTCTCAGGAGTTCAAATAGAAATCTCCAAAACAACATATCATTCGGGAAAGTGATTTCAAACAATTTCCTATTTGAGAATGAAAGGGACGGCTTTCATACAACCATTCCATTGACTGTATCATCTCAAATTCTATCTTCATCTGGCTTTCCTGCTCTAAACAATCGTACAACAACTAGCGTTCCGGCTCGATCAGCCCCTTGTCTTCATTCATCACCGCCAGTTTCTCGGCGCCCTCCCTCACATCATGGCCTCGTCGATCACGGCTATTTTCCGCTCCACAGCGACAATGTCGGCCTCCAGCTTCCATATACTCCGTCCACCTTTCCAACCCTATACCGCCACTCAAGTCGCCCGTCTTGCGAATACTGACGTGCCGTGAAATAGGATGTCGTATTAGGACCGTTACTGTTGTTCCGCACGATAATGAAGATGCGCAAGCCTTGTTCAGAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //