Array 1 194686-196299 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3801 NODE_1_length_269877_cov_71.610351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194686 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194747 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194808 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194869 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 194930 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 194991 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195052 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195113 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195174 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195235 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195296 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195357 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195418 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195479 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195540 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195601 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195662 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195723 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195784 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195845 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195906 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195967 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 196028 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196089 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196150 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196211 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196272 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212432-213071 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3801 NODE_1_length_269877_cov_71.610351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212432 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212493 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212554 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212615 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 212676 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212737 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212798 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 212859 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 212920 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 212981 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213042 29 96.6 0 A............................ | A [213068] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //