Array 1 66440-65940 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP040856.1 Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     66439	    36	 100.0	    30	....................................	TATTCTTTATCAAATGAACTCATTGCCCAA	
     66373	    36	 100.0	    30	....................................	AGTTGATATTATTAAATCGGTCGAGATGTG	
     66307	    36	 100.0	    30	....................................	AAGTAATTTAATAACTAAGTTATAGGTCAT	
     66241	    36	  97.2	    30	..............C.....................	AATCTATCCTTGTCTTTTTCGTTAAGCCCT	
     66175	    36	 100.0	    30	....................................	ATGAAATGTCAGAGGACAATTACAATTTTC	
     66109	    36	 100.0	    30	....................................	TCTTTCGCCAAGTAAGATAGCATATATACA	
     66043	    36	 100.0	    30	....................................	TAATTAAAATTATTTGATTTTCTCAATAAT	TA [66015]
     65975	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  99.7	    30	GTTTTAGATATAAGTCATTTTAAGTACATAGAACCC	                              	       

# Left flank :   GTATTTCAGATAAAATAATAGTTATTAAAAATTTACTTATTGCTTGTCACGCTAATGCTTCTGCTGGATATATGAAACAAATTAATGTTAATAATACAAATATAAATACTATCGTTACCCTTACTGATAGCGCTGAATTAATCTATCAATCTCCGACTGGAATGCATGAAGTGAAGAGAAAAATATCTGATTTATTTTAAATAGAGCAAAAATACCAGGAGCCTGTGCTTCTGGTATTTTTATTGCTAATTTAATTAAATATGATAGAATAAAACCATAGGGAGTAGCTCTCCTTATATATGGAATTGCTATTAATGTTGGGTCGCTCCCATGTTAAATAGCAATTTTAGGGTTCGTATACTTGAAATGATTTATATACTGCTTACTTTTTTTGATAAGCTACGTTAAAATAAATTATTATATGTAATCATTGCTCGAGCTATCTCGAGCTTTTTTTGTAGAGAAGAAGCACTCTATTAAAAAAGTATGATAACAGATCG
# Right flank :  TGTACAAGACTATTTTACAAATGCACCAAAGTTTTAGATGTAGGCTATTTCAAAAGATAGTCACCTTTTATATGCAACAATATAGTCTAGAAAAAATGGCTGTTTGTCAAATCCTGTTGATGAATAGTTTTGAAAAAGAATCAAGCAACTAAAGAATAGTTGTTTGGTTCTTTTTGTTTGATGATATTTTCTTCTAGCCTGATTCTAATTAATAAATGTCTAAAATTACTGTATCCGTAAGCAGTTCGTTCAATTTGCTTAATCTTGCGATTGACACCTTCAAGACAGCCGTTGGAGTAGCTGGAGGAGATACCATTTAGAATGCCAGTATAATTGTGCTTAAAGGTTAGTAATGTTTGATGCATTTGCTTGCCTACAGCTTGTTTTGAGTGAAGCAGATGAATAATCTGCTTTTCATCTTTGTTTTTGATAGCAGTCCTAAAGTCCTGCATAACCCAATATGTGTTTTCGAGATCTTTATTACAGTCTAGGCCGTCTAA

# Questionable array : NO	 Score: 3.25
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATATAAGTCATTTTAAGTACATAGAACCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,-0.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//