Array 1 25651-24559 **** Predicted by CRISPRDetect 2.4 *** >NZ_APVD01000100.1 Neisseria meningitidis NM3223 gnm3223.contig.99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25650 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25584 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25518 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25452 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25386 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25320 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25254 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25188 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25122 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25056 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 24990 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 24924 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 24858 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24792 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24726 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24660 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24594 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //