Array 1 59173-57275 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTH01000013.1 Salmonella enterica subsp. enterica serovar Infantis strain inss24 scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59172 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 59111 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 59050 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 58989 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 58927 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 58866 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 58805 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 58744 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 58683 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 58622 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 58561 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 58500 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 58439 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 58378 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 58317 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 58256 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 58195 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 58134 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 58073 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 58012 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 57954 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 57893 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 57832 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 57771 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 57710 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 57649 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 57588 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 57527 29 100.0 11 ............................. CGGCCAGCCAT Deletion [57488] 57487 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 57426 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 57365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57304 29 93.1 0 A...........T................ | A [57277] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 77071-75455 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTH01000013.1 Salmonella enterica subsp. enterica serovar Infantis strain inss24 scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77070 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 77008 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 76947 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 76886 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 76825 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 76764 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 76703 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 76642 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 76581 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 76520 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 76459 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 76398 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 76337 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 76276 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 76215 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 76154 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 76093 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 76032 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 75970 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 75909 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 75848 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 75787 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 75726 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 75665 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 75604 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 75543 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 75482 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //