Array 1 168870-167461 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJS01000003.1 Escherichia coli strain 1724 L1724_S5_L001_R1_001__paired__contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168869 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 168809 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 168749 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 168689 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 168629 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 168569 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 168509 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 168449 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 168389 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 168329 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 168269 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 168209 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 168149 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 168089 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 168028 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 167968 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 167908 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 167848 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 167788 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 167728 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 167668 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 167608 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 167548 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 167488 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178861-177931 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJS01000003.1 Escherichia coli strain 1724 L1724_S5_L001_R1_001__paired__contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178860 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 178800 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 178740 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 178680 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 178620 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 178560 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 178500 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 178440 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 178380 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 178320 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 178260 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 178200 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 178140 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 178080 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 178020 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 177960 28 85.7 0 ....................T...C.CT | C,A [177934,177937] ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 448965-449970 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJS01000033.1 Escherichia coli strain 1724 L1724_S5_L001_R1_001__paired__contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 448965 29 100.0 32 ............................. ATCCCGACGGGCAACGCGATACCCGGTTTATT 449026 29 100.0 33 ............................. ATTCCGGACGACGTGCTGGCGCGATTCCTCGGC 449088 29 100.0 32 ............................. ACGATTGGGCAGCCAGAGTTGCCGCCGGGAAA 449149 29 100.0 32 ............................. TCCGCGTGTCGCGCTGTCGCGCAGCCGGACGA 449210 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 449271 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 449332 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 449393 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 449454 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 449515 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 449576 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 449637 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 449698 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 449759 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 449820 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 449881 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 449942 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 475673-476799 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIJS01000033.1 Escherichia coli strain 1724 L1724_S5_L001_R1_001__paired__contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 475673 29 100.0 32 ............................. GATCCGGCGTCATGGGGTCGCCCCACAATACA 475734 29 96.6 32 ............................T GCTCCCACTCTATCGTTACGTGCTCACCGCAG 475795 29 100.0 33 ............................. TTTGCCTGGGCCGGTTCACCAAAAACCGCGCGC 475857 29 100.0 32 ............................. GCAACCGTCACAGCCTGCCCTGGCTTTACATA 475918 29 100.0 32 ............................. TCTCTTCACTTAAACTGGACGCAGTTTGTTCA 475979 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 476040 29 96.6 32 .............T............... CGGCGTGACACACATAGTCATTGTGTACGCTG 476101 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 476162 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 476223 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 476284 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 476345 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 476406 29 100.0 32 ............................. GAAAAGTTACTTTTGTGTTCAACTGATGCATT 476467 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 476527 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 476588 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 476649 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 476710 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 476771 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //