Array 1 222805-226115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJT010000001.1 Bifidobacterium longum strain 1001136B_160425_B5 NODE_1_length_504930_cov_78.3099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 222805 36 100.0 28 .................................... CCTCCGGTTGCATGTAAGTGCGCCCTAA 222869 36 100.0 28 .................................... GTTCCGCCCATTGGAATCTACCCACGGT 222933 36 100.0 28 .................................... TAGGAGGTTTGTTATGAGCATTAATACT 222997 36 100.0 28 .................................... GGCGCCCGGTTCCAGTGCGCATATATAT 223061 36 100.0 28 .................................... TGCTTACCGCGCCCTTAATACCGTTCCA 223125 36 100.0 28 .................................... AACCGCTTCGCATACATGTGGAAGCTGC 223189 36 100.0 28 .................................... AACCTGTTGGCCTGGTCCCAGTCGCTCG 223253 36 100.0 28 .................................... ACGAGGTGCGCACCCAGTCACCGGCCGT 223317 36 100.0 28 .................................... CTACCGTGATTAGCTTCTTCATCTCGTT 223381 36 100.0 28 .................................... GAGTCGCAGTAATAGACATTGCATCCAT 223445 36 100.0 28 .................................... CGTTGGTGCGCCCTGCTCAGGTGCGTAT 223509 36 100.0 28 .................................... TGTTGTAGACATTGTTGCTCTCCTTTGC 223573 36 100.0 28 .................................... CCACGTATGTATAATATAACCCGTGTGA 223637 36 100.0 29 .................................... GAAAACATTCCAACAATACGCCTTGCGTA 223702 36 100.0 28 .................................... AAGCGGCGGCTGCTGATACGTGAACCGT 223766 36 100.0 29 .................................... CGATAATCTGGCCGAACGGCACGGCGATG 223831 36 100.0 29 .................................... GCGACCATATTCGAGTATGACCTGAGACT 223896 36 100.0 28 .................................... AGTTTATGCAAGGCGAGTACCCTGCCGT 223960 36 100.0 28 .................................... AAAATTTCCGGCGGGGCAACCACGAATT 224024 36 100.0 29 .................................... CTTACGGCGTGTTGCGTTTCCACCGTATC 224089 36 100.0 28 .................................... GTTGTCCTTCCTGAGATTCGTCGGGTGA 224153 36 100.0 28 .................................... ATTGTAGCCGGGTCACGTATGCATCTAG 224217 36 100.0 28 .................................... GTCACCTGCGCATGATATTCTGCGGACA 224281 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 224345 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 224409 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 224474 36 97.2 28 ...............................A.... TGTTTACGCTCAAAAAGCACATTAGATT 224538 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 224602 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 224666 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 224730 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 224794 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 224858 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 224922 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 224986 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 225050 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 225115 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 225179 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 225243 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 225308 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 225372 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 225436 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 225500 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 225565 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 225630 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 225695 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 225759 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 225824 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 225888 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 225952 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 226016 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 226080 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 52 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //