Array 1 1171-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPX01000055.1 Acinetobacter baumannii strain Pesh-20 AB01op_S26_L001_R1_001_trimmed_contig_55_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1170 30 93.3 30 .................A...........C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 1110 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 1050 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 990 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 930 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 870 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 810 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 750 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 690 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 630 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 570 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 510 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 450 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 390 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 330 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 270 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 210 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 150 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 90 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 30 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ============================== ================== 20 30 96.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : G # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 74964-72952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPX01000007.1 Acinetobacter baumannii strain Pesh-20 AB01op_S26_L001_R1_001_trimmed_contig_7_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 74963 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 74903 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 74843 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 74783 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 74723 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 74663 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 74603 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 74543 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 74483 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 74423 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 74363 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 74303 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 74243 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 74183 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 74123 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 74063 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 74003 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 73942 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 73882 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 73822 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 73762 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 73702 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 73642 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 73582 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 73522 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 73461 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 73401 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 73341 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 73281 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 73221 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 73161 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 73101 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 73041 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 72981 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 34 30 95.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //