Array 1 127407-128777 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWK01000011.1 Caldimonas taiwanensis NBRC 104434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127407 28 100.0 33 ............................ CGACAAGACGCTCGTGGATGCCGGCATGCTGCG 127468 28 100.0 33 ............................ TGTGAGGTCTATAGCTGCTGCGGCGGCGGTGGC 127529 28 100.0 33 ............................ CTAGATGATCTTCCATGAAGCAATTCAAGCAGA 127590 28 100.0 33 ............................ TGCACCAGCCGCATGCCTGCGGATGTGTCAGAC 127651 28 100.0 33 ............................ CTCGGCGCAGCCCCCAAGCCCACTAAGCCCCCA 127712 28 100.0 33 ............................ CTTCACGGCCCCGGCTTCCCCTTTACGCGCCAT 127773 28 100.0 33 ............................ TGCACCCCGGTGCGGACCACCTCCAGCGCCAGC 127834 28 100.0 33 ............................ TGTAATACGTTGAGCAAATCTATCCAGCATCGC 127895 28 100.0 33 ............................ TCTTTCATCAGGTGTTCCACACGGCGAGCGCAG 127956 28 100.0 33 ............................ CGTTAAGTGTAATAGCGTGGTTGATAAAGAGCA 128017 28 100.0 33 ............................ GCACCACGTCAGGCAGTTCCTCATCAGCGATCA 128078 28 100.0 33 ............................ CAAGCAGGCAGGTCGAAGGTGTGGACGCGGATG 128139 28 100.0 33 ............................ CGAGCAGCCCTACATGCACTTGCGTGTGACACC 128200 28 100.0 33 ............................ CCGACCAAGGAGCGAGTGAACATGGGAAACAGA 128261 28 100.0 33 ............................ CCGCGTGGGCAAGACCATCGCGGCCGGCACGGA 128322 28 100.0 33 ............................ CGCCTTGACGATCGGATTTCTTCCGGTGTGGGC 128383 28 100.0 33 ............................ GCACGCCAGGTTGGTGGACGCGCTCGGCGTCAC 128444 28 100.0 33 ............................ TGAGTCTGCATGGATCCGCCGCCACGGCGGGCG 128505 28 100.0 33 ............................ CATCACTTCGGCGGTGCTGCAGGCGTCGTCCAG 128566 28 100.0 33 ............................ GCACGAGCGGGCCTTCATCGCGGGCAACCGCGT 128627 28 100.0 33 ............................ TCAGATTCTTCCTGTACGACGCCACGTCCCATG 128688 28 100.0 33 ............................ GCCGAGCTGGCTCATGGGCTTGCGGTTCGCGGC 128749 28 82.1 0 ....C.T........T....T......T | T [128766] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 33 GGCTGCCCCGCGCGAGCGGGGATCGACC # Left flank : CCGTGCCGCTTGCCTTTGGTGCGGTGCGGGCCATGCTCGACGGCAAAGCCGACAGCTTGGAACGGGAAGTGCGCCGCCGAGCGGCAGCAGCCTTCCGGCGCGACAAGCTCATCCCGAAGATGATCGAGCGCATCAAGGAGCTTTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTGTCTGCGCGCGTGCGCGGCTTCTTGGCCTCGGCGATGCTGGAACTCGCCCCTGGCGTTTACAGTGCGCCACGGTTGTCCCCAGCGGTGCGCAGTCGCATTTGGGACGTGCTCGAAGCCTGGTTTCCCAACGAGCGGGAGGCTTCGATCGTGATGCTTTGGCAGGAGCGAAACATGCCTGGCGGACAAACCGTCCGCAGTTTGGGCAGCCCTCCGATCGAGTTGACCGAGGTCGACGGCCTGATCCTTGCCCGCCGGCCGTCTGAGCGCTGAATCACCAGGTCAGCGTAAATTCTTTAACAATCAATGAGTTACACTGGACA # Right flank : TTCACCAAGAGATACGGTGACATCGCTCACAGAGCCTCTTGGCTGTCTCCGTACAAGAGGGCGACCGAATGCGGGCCCACGCCAAAAGCGGGCGCTCCACTCTCAAGCCGGCTTGTGGCGATTGCCTCGAGGGTCACGTCTCTCGCTTGTGCGATCCATCGCACAGCGGGGCGTTTGCGGTGGATTTGCAGCCGCAAAACCACACCGTGGTATCTCGGGTTGCGCTGTACTTCACGGGCGTGAAGACGCCTTGGGCCCGGTGCGAGCCGTCGCAAAACGGCTGGTGCGTGCTCAGCCCGCAGGCGCACCACCAGTAGTCTTTGCCCGCTTCCACCTGCACCGCAAATGGGCCGTTGCTTGCGCGAACGGGTGTGGCCATGATGCCCTCCTGACGTGGGTTGAAGGCCGTGCCCCATCTTGGCACGCTTTGAGACGGACCGCCAGGGGCCCCGTGCGAGAAGACTCGCAGACCCCAAGGGGGGCCGCCTGCAGGGCACTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 453-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWK01000005.1 Caldimonas taiwanensis NBRC 104434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 452 36 100.0 31 .................................... GCTACATCAACACGAGCGATGCACAGCGACC 385 36 100.0 32 .................................... TCCTTGGGGGGGAAGGGCGAGGGCGCCAGCAG 317 36 100.0 33 .................................... GCACCGTCGAGATTCGCGGGTCAGGCACCTGGC 248 36 100.0 35 .................................... TCTTGGGCCCAGCGCTCGCGCGACGCGCACAGTGG 177 36 100.0 35 .................................... GGCAAGCCGCATTTTCGCGGCTTGCCAATCGTGCG 106 36 100.0 34 .................................... AACGCGGCCCAGCCTCTTCGCTCGCGATGCTATG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 100.0 34 TTTCGATCACTTCCCCGATCACGAGGGGATTAAGAC # Left flank : GAATCGTGGAGGAGCGCCACGCGGAGCTGTACCGTGGGTGCGCTGAATTGTTGGGTGATTTGGAATTCGTACTGCGGGAGTGGCAGCCATGAGCAAGAATGCCAGCAAAACCTGGTTGGTGGCCTACGACATCGCCGACGCACGCCGCCTTCGAAAAATTCACCGCTTGCTGCGGCGTGCTGGTGCCAGCGTGCAATACTCGGCCTACAGCGTATGTGCCGGCGACGATGGATTGCACGACCTTTTACATGGATTGGCACAGCACATCGACGAGGCCCATGATGACATTCGGGCCTACCACCTTCCTACGCATTGCAAAGTTTGGACGCTGGGCTGCCAGGAGTTGCCGGAGGGGATCATCGTTGACGCTGACACGGCGGCTCGGATGCTGCTGGAGATGCCAGCCCCCGAGCCGACCCCCCTTGACGCTGAGGAACTGGCATGATGTTGGGAAGTGCCCGTCCAAGTGCTTGTCGCGCTTGGACTTTTGGCGCTGAGCG # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCGATCACTTCCCCGATCACGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 124641-121655 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWK01000007.1 Caldimonas taiwanensis NBRC 104434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 124640 37 100.0 30 ..................................... TCTCTGCGCGCAGGGCGTCACGCTCGGCCC 124573 37 100.0 30 ..................................... TGTCGCCCTGGCCGTTCATGGCGTGGCGCG 124506 37 100.0 30 ..................................... TGCGCCGGGCTCATAAAGTCACCGATGACT 124439 37 100.0 30 ..................................... TCCCGTCGCTGACGCCATCACTCGGTGATT 124372 37 100.0 30 ..................................... GTCGCCTGGGGTTCAGGCAGCCGCCGGCAG 124305 37 100.0 30 ..................................... TCGTCGGCGAAACCCCTTCACCTTGTCTCA 124238 37 100.0 30 ..................................... TGAAGTGCGACGGCCACCGCGTCACGTTTT 124171 37 100.0 30 ..................................... ATAAAAAGGAGGCTTTCCTTGAGTCGCCCC 124104 37 100.0 30 ..................................... CTTCTTGATAGCAGGTGCGCCGCCAGTGGA 124037 37 100.0 30 ..................................... TTCGAGGCTGTTGTACTCCTGGTCGAGCCC 123970 37 100.0 30 ..................................... CACCTTCATGGATTCCTCGCTCACGCGCTT 123903 37 100.0 30 ..................................... CCCAGCCACGGCGGCGGGGACCGAGACCCC 123836 37 100.0 30 ..................................... CGTATGCGCGAGAGCGACCCGCACAAGGGC 123769 37 100.0 30 ..................................... GAGCCGCTTTGCGATCCCCCTCCACTCCAG 123702 37 100.0 30 ..................................... TCGTAGGCCGTGGCATAGCGGACGATGCGG 123635 37 100.0 30 ..................................... CATGTCGTAGGCGCTCACGCGCTCCGCCTC 123568 37 100.0 30 ..................................... ACCGGCCAACGCATGCGGCGCAACAGCAGC 123501 37 100.0 30 ..................................... GTCACGGCAGGACAGCATCCGCCATGATTT 123434 37 100.0 30 ..................................... CTCTGGAATGCGCACCCCGGGCTTCGCGTA 123367 37 100.0 30 ..................................... CCTGCGCCTGGTGCAGGCTCATGAACTCGA 123300 37 100.0 30 ..................................... TGGGACTGTCACGTTCAACGCGGACACGAG 123233 37 100.0 30 ..................................... TGTTGGGACGCTGGATGTAGCCTTTTCTGA 123166 37 100.0 30 ..................................... GCTCGGAATACACGGCCGAACCGATGTCGC 123099 37 100.0 30 ..................................... CGCCTCGCTGGCCGGCTCACCGCTGGTGGC 123032 37 100.0 31 ..................................... TTTGCTCATCGATATAGAGCACGGTCGAAGA 122964 37 100.0 30 ..................................... GCGAAACAGATTAAAACGATAAGCAGGATT 122897 37 100.0 30 ..................................... CTCTCACCATCGATTCTTTTACTGCACTCG 122830 37 100.0 30 ..................................... CGTTCTTGGGCGATAAATGCAGTTCGTTGC 122763 37 100.0 30 ..................................... TCATGAATCGTCCTCGGACGCAAACAGCGC 122696 37 100.0 30 ..................................... AAGCCCAGTAACCTGTCCAGAGGACACACC 122629 37 100.0 30 ..................................... CGGCTGTCGTCGCGGGCGCACTCTCCACCG 122562 37 100.0 30 ..................................... AAGGTCGCACATATCCTCGACGGTGTGCCC 122495 37 100.0 30 ..................................... CGCCGTCTTGCCGGTGCCGGGGGCGCCGGT 122428 37 100.0 30 ..................................... GGTCAGCAGGGCGGCCGCACGCGGGCCGCC 122361 37 100.0 30 ..................................... CAGCTTGCTGGTGAAATGCGACGGGCATCG 122294 37 100.0 30 ..................................... TGTGAAGGGCCGGTTCTCCCAGGCCACAGG 122227 37 100.0 30 ..................................... CCGCTTGGAACACGGCGCGAGCGACATTCA 122160 37 100.0 30 ..................................... TGGGAGCGCGGCACCACGGAAAAGTCCCGC 122093 37 100.0 30 ..................................... CAGGGCCTGCACCTCCTGGCGCAGCTGCTG 122026 37 100.0 30 ..................................... ATGACGTGAAGTACGCTGGCATGTCCACGC 121959 37 100.0 30 ..................................... ACTGATGTAGCTCTCAGCGTCCGCCAGCCC 121892 37 100.0 30 ..................................... GGTCAGCAGGGCGGCCGCACGCGGGCCGCC 121825 37 100.0 30 ..................................... TGGTGTTTCAGGCGGCGCTTTTGCAAGAGC 121758 37 100.0 30 ..................................... TACTTTAGTTGCCTTGTGTTTGGCTTATTT 121691 37 97.3 0 .................................T... | ========== ====== ====== ====== ===================================== =============================== ================== 45 37 99.9 30 GAGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : GGAATCTTTGGCCCGCATCTACGAAGGCGGCAGCGAGGTGCTGCTGGAGCTACCCCAGATTGTCGGCCTCCAGCAGCACCACCATGAAATGTAGCCATGCAAGACCATGGGCCGAGACACGAGGCGATACATGCGATTGCTGGTGTTCTTCGATCTGCCCGTGACCACCCGCGCCGATCGGCGGGCCTACACGCAGTTCAGGCGATTCCTGCTCAACGACGGATACGACATGATCCAGTTCTCCGTCTATGGCCGTATCTTGAACGGCAGCGACGCTGAGGAGAAGCACATGAAGCGGCTGCTGGCCAACCTGCCTCCAGAGGGGTCGGTGCGGGTCCTGACCGTCACCGAGAAGCAGTACGCCAGCATGAAGCTGCTGGTGGGCCTGCCGATTTTTCAGGAAAAGCAGGTCAACGCCAGCCAGATCGTGCTGTTCTGACCGTTTCATGGAAAAGGAAAACCCGCCCAAGCCAAGCCTGGAGCGGGTTGCCGCGGGCCGT # Right flank : GTGCCCTTGATCAGCGGAGCAGCGCCCTACTGAGCAAGGGCACGCGCTGCGCGCGATCTGCTGATGACGTGCAGTCAGTCGTGATACCGCAACTGCGCCGCCAGCGAGGCATCGCCTACCACCTTGTAGACCATCCGATGCTCCTCGGTGATACAGCAGGAGCAGAAACCGGTTGGAGCGTGCTTCAAGGGCTCGGGCTTGCCCAGGCCATCGAAAGGCTCACGCTGGGTTCGCGGATGAGCTTGTCGATGCGCTCCACCATGCGGCGGTCCTGTTTTGCCCGTCGAGGAAGTCCTCCCAGGCGGCTTCGGCAAAGCCCAGCCTCAGTCGACCAGCCCGCGTTCCTGGCCTCCCCGCTGCGGGTGATGATCACAGCTCAAGGTCAGTGCACACCCGATCCATCGTACTGGCCAGGTGGGCGCGGGCGGCAGATTACGTGATGGCATCCATGACAGGCTCCTTGTACGTATACAAGTTTCGCTGCCAAAAGTTCAGCCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTGTAGCTATCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 65118-61328 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWK01000016.1 Caldimonas taiwanensis NBRC 104434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 65117 37 100.0 33 ..................................... TCCGGCTATTGTCGTTAACACGAAAACACGCGG 65047 37 100.0 33 ..................................... ACAGTTTCGCACAGGTCAACCGCAGCAGCAGCT 64977 37 100.0 32 ..................................... GTAATCGACTTCCGCAGTTGTGGCTAAGAATT 64908 37 100.0 32 ..................................... TGAGGTTTCGCGCGCGCGTAGCATACGCGCGC 64839 37 100.0 33 ..................................... AGATACACGGAATCCGTGTAACAACACCACACA 64769 37 100.0 32 ..................................... CGCCTCTCTGGCGGCATTGGAGCGTCTATGGG 64700 37 100.0 32 ..................................... GGCGCAACTCGATCACCCGGACACGAGGAGTG 64631 37 100.0 34 ..................................... CGAGCGAAAGCGAACGTGCTCGCGCAACCCACAT 64560 37 100.0 29 ..................................... TCTTTCCGCGCGGTCGGTGGACCTACCAC 64494 37 100.0 34 ..................................... GACGTAAGTGCGCTCGGATTTCGATCGGCCAACG 64423 37 100.0 32 ..................................... TTTGCGCACTTCATTTTCGATTTTGGCGGCGA 64354 37 100.0 33 ..................................... GTATCGACGCCACGCTGTTGAAGCGTGGCGTCG 64284 37 100.0 35 ..................................... CGCTTGGTTTGCTCTTTCAGCAGCTTGCGGGCTGT 64212 37 100.0 32 ..................................... CATACGACTTCGCACAGGTCCACCGCGGCAGT 64143 37 100.0 33 ..................................... TGGCCGACACGGCCGAAACTAAGTCTCGCGCCG 64073 37 100.0 33 ..................................... GTCATGCATTCGCATGACATGGAACACAAACGA 64003 37 100.0 32 ..................................... TCCCTCGATAAGAACTCGAGGGTGATTTCCAG 63934 37 100.0 32 ..................................... GGCTCGCAGCCACCTAAATACATCATGTTTCG 63865 37 100.0 34 ..................................... GGGGACCCCTTGTCCCAGTACGAAAAAGGAAGTG 63794 37 100.0 30 ..................................... ACTTGTCCAGCGCTTTCACGTCGCAGTCCG 63727 37 100.0 31 ..................................... GCAAGCAACGAATGCGCGCGCATGCTACGCG 63659 37 100.0 33 ..................................... CCTTTCCATATCGTCTATGTACGCGATACGGAA 63589 37 100.0 34 ..................................... TTGACGGCGTTGTTACTGCGAGCGGCGATTTGGG 63518 37 100.0 33 ..................................... CTCTTTCAATGGCGCTGCGTCTTCCTCGTACTT 63448 37 100.0 34 ..................................... AAAGAAGCGATCGCCCACATGCGGATGGGGCAGT 63377 37 100.0 31 ..................................... CCACCCACCACTGTACGCGACGTGATACTGG 63309 37 100.0 32 ..................................... GGTTTTCGATGAGTGACTCGTGATACCATTCG 63240 37 100.0 31 ..................................... GGTATATTGCCCGCGGGCAACTACCGAACAA 63172 37 100.0 31 ..................................... GCAGGGCCTCCGTGTATGACCTGGCCCGGCC 63104 37 100.0 34 ..................................... ACAGTGATGATGAATTCATCGACCCGGGGGTCGA 63033 37 100.0 33 ..................................... GGCAACTACCGAACAACTTCTCGCTGGACAAGT 62963 37 100.0 33 ..................................... TCTTTCTTCGGCTCGTTTTTCGCGGATTGTTCG 62893 37 100.0 33 ..................................... CCTCGCCTTGTCGGCATCGTCGCCGGTATAACC 62823 37 100.0 33 ..................................... TGCGTTCTTCTGTTAGCTTCTCCAACAGTGACA 62753 37 100.0 35 ..................................... CCATGACCGGGTCATATAGACCCACCCACCACTGT 62681 37 100.0 32 ..................................... AGCCGCGTTTTCGCGGCTTGCCAGTCATGACG 62612 37 100.0 33 ..................................... TAATACTTGTACACTTCGTCAAAAATGTCGTGG 62542 37 97.3 34 .......................A............. CTTGCCGCGACGTACCGCTGTACAGTGGGGAGCG 62471 37 100.0 32 ..................................... GTCGTCGCGCGAACCCTTGCTCATCAAGGATG 62402 37 100.0 33 ..................................... CGATTTGCCCCGTCACGTGAGCTTTCACCCTTG 62332 37 97.3 33 ......................T.............. CTCTTTGTGCAGCTTGTTACGCGCCATGTTGAA 62262 37 100.0 32 ..................................... CTTTCTGCGCGGTCGATAGACCTACCGCAAAA 62193 37 100.0 32 ..................................... CCCATACGGTGAAGCAATTGCCGCCATCTTCT 62124 37 100.0 32 ..................................... AAGCCGGCGCGCGGAATTGAGTTGGCAAGCCG 62055 37 100.0 33 ..................................... CGAATGGGGGATACCCTGTATCCTCCTGGAAGG 61985 37 100.0 32 ..................................... ATGAATTCATGGACCCCATCGCGGGGGTCGAG 61916 37 100.0 31 ..................................... ATCGAGGCCTCGCGCTCGGCCAGCCGATGGC 61848 37 100.0 30 ..................................... TCTTTCGCTTTGGCGATGGCATTGTCCACC 61781 37 97.3 32 .......A............................. CTGGGATGAGGTAGCTCACGCCACCTCCTCTG 61712 37 100.0 32 ..................................... CACAGCGTCCGCATCAGGGATAGCCAGATAAG 61643 37 100.0 32 ..................................... CCGCAGGGCGGCCCGTTTTGCGGCCCTGCGCC 61574 37 100.0 33 ..................................... GCTCGGCGCTGATGCGCGAGTCGATGGCTCGCA 61504 37 100.0 32 ..................................... CGCAATCCGCTACTTCGTAGCGGAAAAATGCG 61435 37 100.0 33 ..................................... CAATTGCGGAAACATGATCGCCGGCCTGGCTGT 61365 37 94.6 0 ...................................CT | G [61331] ========== ====== ====== ====== ===================================== =================================== ================== 55 37 99.8 32 GTTTCGATCACTTCCCCGATCACGAGGGGATTAAGAC # Left flank : AAACTTAACGTAGTTCATTTTTTACCTTCAGC # Right flank : GGCAGCTCGTGACTCCCCGATGGTGAGTAGACGGGAGTGGCTGCCTTCTGAGCTCGATCAGGTGGTGATGAAGGAATTCAAATATCCACGCTGTTTGTTTTGCCGGCCGATCGGAGTGGGATCATGACTGCGCAGCGTCGTGAGATATTTACAAATGAGGGTGTCGAATCCTCTTTGCGTACTCAGCCTCTTGAAAAGTATTTTTCATTGACTGGCCAGCGCCCGAAGTTTTGTATCCCCAGCACGTCGCTGTGGCGGGGGTATGTCGGCTCTTGGGATGTGCGAGATCGTTGGTTGTATCTCGTGGGGATCGAGGGGCGCGCCGACGGTGGGCCGGTCACGTTGGAAAGCTTGTTTCCGGGGTATCCCGAGCGCGTGTTCGCTCATTGGTATAGCGGCGTGCTGGAAGCGCCTGAGGGGGAAGTGTTGGGCTTTGCTCGCCATCGGTACGAGTTGATCCAGGAACGTGAGCGGTTTTTGAGGGTGGATCGTGGCGTCGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGATCACTTCCCCGATCACGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //