Array 1 120461-120637 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSD01000002.1 Bifidobacterium dentium strain BRDF 24 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 120461 24 100.0 27 ........................ CTCAGAGGCACATGCAGGCATCCTACA 120512 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 120563 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 120614 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : ACTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATCGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 117152-113776 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSD01000004.1 Bifidobacterium dentium strain BRDF 24 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 117151 33 100.0 33 ................................. CACTCGCTGGTGGTGTCCTGGTTGTTGAACGGA 117085 33 100.0 34 ................................. TATGAATCGGTGTATGGCGATGCCGTAGCGGAGG 117018 33 100.0 34 ................................. GATTATGGTCAGTCGTCACCCGTGAGGAAATCAC 116951 33 100.0 33 ................................. GTTGAAGCATCGCTCTATCCGCCTTTCCAGCTC 116885 33 100.0 33 ................................. TCCGCCGCCGTGGACGTGGACGCCACGCACACA 116819 33 100.0 34 ................................. ATCATCTGGAGGTCACCCATGTCCAAACCGTCGA 116752 33 100.0 33 ................................. TTGTAGATGTGGTCCACGAGCTGGCGGTTCCAC 116686 33 100.0 35 ................................. CTTGTCGAGCACCTCGCCCTGGACCGTCACGTTGA 116618 33 100.0 33 ................................. ATGGTCGAAGCTGATCCCGTCCGAAGATGTCAA 116552 33 100.0 34 ................................. TGACGGCGACGTGTATCTTAGCCAGAAGACGGTG 116485 33 100.0 34 ................................. TATGGCTACTACGGCTCTCGGCATCAGGCCGGAC 116418 33 100.0 34 ................................. TGCCGACACATGGAAGGCACGACAAGACCACTCA 116351 33 100.0 33 ................................. CCGTAACATGGCCGACACCGCCTCCTTCGGCGT 116285 33 100.0 34 ................................. TCAGTATGACTAAGAATCTTGAAGTCACTGCGAG 116218 33 100.0 34 ................................. TTTCCGATTCCGACGCGCAGGAGGCCCTGCTTGG 116151 33 100.0 35 ................................. AAGATAGCGGGTGTCGATGGTGGCGGGAAGCCCAA 116083 33 100.0 33 ................................. CCTTCGCGACGTTGAGCCGCTCCAATTACATTT 116017 33 100.0 34 ................................. ATCTTACTTCATGCTTGGAATCGGGGTTGTTGAT 115950 33 100.0 34 ................................. TTCGAGTTGACGAACGTCTGTGCGTTGGTGCCGT 115883 33 100.0 34 ................................. CATCTGGAAAATCATTTCATGGCAATCAAAAACC 115816 33 100.0 34 ................................. AAGGCATTAGCGAGTTGCATCGCGAAAGCTCGGT 115749 33 100.0 33 ................................. TTGAGGGCGTCCACGAGCTGCTGACCAGCCAAC 115683 33 100.0 35 ................................. GCAATGGAATCATCGAAAGCACCCGGTTTCATCAC 115615 33 100.0 33 ................................. ATGCAGAGCACTTTGGATGATGCGGCCAGGGTG 115549 33 100.0 34 ................................. TCATTGAGTTTCAACCGGTATCCCTCATCGAAGA 115482 33 100.0 35 ................................. TTCGTTCCGGTCAGCTTGGTGACGTTCGCCGCCTC 115414 33 100.0 33 ................................. CACATCACATGTGCCGGTTTGAGTCGTCCGCAA 115348 33 100.0 34 ................................. CTGAATTGCGTACGGCTGTTGCGAATGAGGGTGG 115281 33 100.0 35 ................................. GCCTGTGATTGCGCGTTCGCGGCCGCGGTGGCCGG 115213 33 100.0 33 ................................. TTCAGCCGTTGACGGGATTGTTGGCTGGCTTGG 115147 33 100.0 33 ................................. GGTCAGTTGCCCTTACCGAAGTAGTAGTCGGTC 115081 33 100.0 36 ................................. CATCCTCAGAATGCAGACGGTCGAACAAAATGCGAG 115012 33 100.0 34 ................................. CAAGTCTCCCGCGCGTGGCAACAGGTGCATTTGA 114945 33 100.0 35 ................................. GATGCGATGGAAGACCCAATGGCCTGAGTGCCTGG 114877 33 100.0 35 ................................. CGTGAGAATCTTGACGGTTGGACGGTAGGCGACGG 114809 33 100.0 33 ................................. ATCAGCTTGGTATCAAGCAGAAGATTCGTCCCG 114743 33 100.0 33 ................................. AGTCTGCGCGACATCACCGACTCGTATAAGAGT 114677 33 100.0 34 ................................. TACAACGGCAAGACCCACAAGACCGAAGCCACCT 114610 33 100.0 34 ................................. TCATCAGTACGCACCACTGACACGGTCGGGATTC 114543 33 100.0 33 ................................. ACGACCTGTCGCTTGGCTGTGGAGGCCGGATCA 114477 33 100.0 35 ................................. ATACTCGTGAAGGAGGCATTCGTCAGGGTGCAACC 114409 33 97.0 34 .....................A........... AAGGGTGCGAAAGGCAGCCCGACATGGTATAAGC 114342 33 100.0 33 ................................. CACGGATTGAAGGTGAGCATCAGCTGATTGATG 114276 33 100.0 33 ................................. TGGAACAGAACGGATTGAAGGCCATGGGCGAAA 114210 33 100.0 35 ................................. ACCATCAGCGTGCTCGACAGGACCCTCACCTACAA 114142 33 100.0 33 ................................. CTCTGCAAATCCTGCTGTGACAGTCCGGCCTTC 114076 33 100.0 35 ................................. TATGTTCACAGATGACTTCCGATTGCGTCACAGCG 114008 33 97.0 35 ...A............................. AGCTTGCGCGGAGTCGAAGCCGTCTCGCATGCCGC 113940 33 100.0 34 ................................. AGGACTATATTAAAAGAGGTTGGCGTTTTGTCGA 113873 33 100.0 33 ................................. GTCAACTCCAACATTCTGCCGTCCATGGCCATG 113807 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 51 33 99.6 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGGGGATGCGTGGCGTGGCGGCGTGTCCGCCGGCGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATTGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTTTTACGAGGTTGGAGCGTCATGGCGGGACGATTCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //