Array 1 52003-52373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHH010000008.1 [Clostridium] symbiosum strain BSD2780061687b_171204_H4 NODE_8_length_107446_cov_37.9062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 52003 33 100.0 34 ................................. AAAAAATTGACCTGTATCAGCAAAGACAACTTCG 52070 33 100.0 36 ................................. ACCACTCTTCCGACCAGGCCAGTATCGGGCGTCCTG 52139 33 100.0 34 ................................. AAGTTTGATGCACGGGGACGATTAACACGGGTGG 52206 33 100.0 34 ................................. GGATGGCAGGAATGGATGAGCAAAGCATCCGATA 52273 33 100.0 35 ................................. TCGTCCACTACCACCATGTCAAACGGCCAGGCATT 52341 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 100.0 35 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTTGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 53121-54027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHH010000008.1 [Clostridium] symbiosum strain BSD2780061687b_171204_H4 NODE_8_length_107446_cov_37.9062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 53121 33 100.0 34 ................................. TTGCGGAGGAGAAGAGTATCTCCCGCGCATCTGC 53188 33 100.0 34 ................................. CCCTATATTCGACCGATATCGTTCCGGTTCCCGT 53255 33 100.0 35 ................................. TTGCCAGTACGCAGGCTACTGCTGACGATGTCCCT 53323 33 100.0 36 ................................. TATCTCCTGATATGAAAGAACTGATGGCACGCAGCC 53392 33 100.0 33 ................................. CCCGGTATCGATCAACTCGCATTTTGTAGAAGT 53458 33 100.0 33 ................................. CTGGCGCTGCCAAGCCTTCAGCCACACCGAAAA 53524 33 100.0 34 ................................. ACTACCAAAGTTATGACTGCCATCATCGCCCTTG 53591 33 100.0 34 ................................. ATACACTTCCGCGCCAGATATATCGTGTTTTCCG 53658 33 100.0 35 ................................. AAAATCAACCGATTTTCGGCCTTCCAGCTCACACT 53726 33 100.0 35 ................................. TAGCGTCTCCCCATACCACTTCGCCCGGTATTCTT 53794 33 100.0 35 ................................. TCGGATACAGGGGTTACAAAGCTGTCAAGCATGCC 53862 33 97.0 33 .........T....................... CTTGAAGTTATGCAGGGCAAGTGGGAGGGCGTA 53928 33 100.0 34 ................................. AAAGAGGTTAACGCCTGCTCGTGTACCTTCTGCT 53995 33 84.8 0 ......T.......T.........A...T..G. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 98.7 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTAATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGCTGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAGATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 76222-75459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHH010000013.1 [Clostridium] symbiosum strain BSD2780061687b_171204_H4 NODE_13_length_89783_cov_34.1696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 76221 32 100.0 33 ................................ GACAGGCTTAAATTATCCTCCATCGTGAAATGC 76156 32 100.0 34 ................................ TTTTTACTGTGCTATAATTTCCATATTGAATACA 76090 32 100.0 36 ................................ GCCAGATCGGCGTATGTAAATGACATCCCGTTATCC 76022 32 100.0 34 ................................ AGCGTTCTTGTCGCTGACCTGTTTGGTCATCTGG 75956 32 100.0 35 ................................ ATTATCAGCATAGTATCCATCATATTACCGCAGTT 75889 32 100.0 34 ................................ ATTTGAAACGATGATACAGTTTATTGCGCAGGTA 75823 32 100.0 35 ................................ CCGTAAAAAGGGCAAGGTAAAAATATGTGCGCCAT 75756 32 100.0 34 ................................ ACTGTCGATTGCATATGCCAGCACCTGAGAAACT 75690 32 100.0 36 ................................ TAAGTTTCGCGGTTGGCGAGAAATTAACGGTTTTGT 75622 32 100.0 33 ................................ GACAGGCTTAAATTATCCTCCATCGTGAAATGC 75557 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 75490 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.0 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : CGTAAGAGCCTGTGGATCGAAACTTTATATTGCTACCGTCATAGTTTTCAGGGCTGTGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAAACCCTTTCTGGTTCCCATAAGTGCCAAATCGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATCAAATGCAGATACCCGGCCGCGCTGAATCCGCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTGATTTAGTCAGACCTTTGATTTCTGACATTGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACCTTACTATTCATTTCACACCTCCATGGTCTCAATCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGACAGGCTTAAATTATCCTCCATCGTGAAATGCGGTCAGGCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 79179-76367 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHH010000013.1 [Clostridium] symbiosum strain BSD2780061687b_171204_H4 NODE_13_length_89783_cov_34.1696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 79178 32 100.0 36 ................................ ATACAGAAGCTCAGACGTAACGACGGAGTGGATCAC 79110 32 100.0 36 ................................ CTACTTTCAAACTGCATAGTTCTGATACACGGACTC 79042 32 100.0 35 ................................ ACCAACAAAGCGATTAGCGATTTAACTGGCCTTAC 78975 32 100.0 34 ................................ ATTCGTTCCTCTTACATCTCCAAACGCAATCAGG 78909 32 100.0 33 ................................ AGTTTTCAAACACTCCCATGTTCTCTGTTTCCA 78844 32 100.0 34 ................................ AAAGTTTCTCGGCTGCAGATGACGGTTTGGTCGG 78778 32 100.0 34 ................................ TAGTTTAAGAAAAACTTTAGCAAAAAACTTTAGC 78712 32 100.0 34 ................................ CTATTCTGCCGGATGGTCTGCCAGCCATTTCTCG 78646 32 100.0 33 ................................ ATTAAAGAGGGGATTGACAAGAAGACAATTCAC 78581 32 100.0 33 ................................ CCTATCAATGCATCCCTGGGCGTAAGACATCAA 78516 32 100.0 32 ................................ AGACAGTCCACGGCCAACATCAGGAGCATGGT 78452 32 100.0 35 ................................ ATTCGTATCCCGTCTTTATCCCATATGCCTATCTG 78385 32 100.0 35 ................................ TTTCACGACCGCATCCCATTCCGGAGACTCCTCCT 78318 32 100.0 34 ................................ CTTATGATGGCTATACAATTATAGTCAATACTGG 78252 32 100.0 35 ................................ AGTGCCTGAATCCGTTATGCAGCTTGTCCGACTGT 78185 32 100.0 35 ................................ TATTTTGGTATGCCCCATCAAGACCATTACTTCTT 78118 32 100.0 34 ................................ ACCCACCTTGAGATACGGGCAATTTGCATTTACC 78052 32 100.0 33 ................................ CCAAAAGGAGGTGAGGGAGATAAAGGATTTTGA 77987 32 100.0 34 ................................ GGAAAACAATAGGGCAATCAAAAAAAACTCTCTT 77921 32 100.0 33 ................................ TGCCATAGCCCGGGCGATTCCCGGAAAAGTCTT 77856 32 100.0 35 ................................ CTTCAGGAGCAGCACATCACCGACACAGTATTTCC 77789 32 100.0 34 ................................ GTCACCCTGTCCATAATCGTTGCTGTCAATCTTG 77723 32 100.0 34 ................................ TAATAGTGGCAATCCTTTTATCCATAAACAAGTG 77657 32 100.0 34 ................................ ATAACCGGTTTTCCATTTGGGCGGCCGATCTTTC 77591 32 100.0 34 ................................ GTCGATTATTTTATTAGTATCTCCTTCAGACGCC 77525 32 100.0 33 ................................ CTTTCCTGTTATTCTGTTAAATCTTCAGTTATT 77460 32 100.0 34 ................................ GGAACGATGTAGCGTTCGGATACAGCCGTCCCGG 77394 32 100.0 36 ................................ TTCCGCTGGTGGAGTGACTATGTACGAGGTCGAGAT 77326 32 96.9 34 ....................A........... ATGTATTGCAGTCGGTTCGCCGTCGCCATGATGA 77260 32 100.0 36 ................................ TACCATAGGGAAGGAGGGCACCACATGGCAGTAGTC 77192 32 100.0 34 ................................ GATGTGGTAGACGAAATGAAGGCCGAAGCAAAAG 77126 32 100.0 35 ................................ TCTTCTCTTTTCCGCCTGCGCTTCCAGTTCTGCGG 77059 32 100.0 34 ................................ GTAAAATGCGCTCCATGCATCCCCGTAGGCTTTG 76993 32 100.0 33 ................................ TTTAATGCCGCCTCTTCGGATACCGTAATCGTG 76928 32 100.0 34 ................................ AAGCCCTATACCGTCCTTATTCCATATCCCTATC 76862 32 100.0 34 ................................ CTGAAGGTCTTCTTTGGTCAGAATCAAAATAGCG 76796 32 100.0 34 ................................ ATTTCCTGCGTGTCGTAAGCACTGGAGCCTTTCA 76730 32 100.0 34 ................................ TTTATATTGCTACCGTCATAGTTTTCAGGGCTGT 76664 32 100.0 34 ................................ AAACCCTTTCTGGTTCCCATAAGTGCCAAATCGC 76598 32 100.0 35 ................................ ATCAAATGCAGATACCCGGCCGCGCTGAATCCGCC 76531 32 100.0 34 ................................ TTTGATTTAGTCAGACCTTTGATTTCTGACATTG 76465 32 100.0 35 ................................ CTTACTATTCATTTCACACCTCCATGGTCTCAATC 76398 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 43 32 99.9 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGATAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : GACAGGCTTAAATTATCCTCCATCGTGAAATGCGGTCAGGCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGACAGGCTTAAATTATCCTCCATCGTGAAATGCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACTTTTTACTGTGCTATAATTTCCATATTGAATACAGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACGCCAGATCGGCGTATGTAAATGACATCCCGTTATCCGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACAGCGTTCTTGTCGCTGACCTGTTTGGTCATCTGGGGTCAGGCTCGTAAGAGCCTGTGGATCGAAACATTATCAGCATAGTATCCATCATATTACCGCAGTTGGTCAGGCTCGTAAGAGCCTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //