Array 1 67537-70619 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAPM01000005.1 Kushneria marisflavi strain DSM 15357 Ga0215642_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67537 29 100.0 32 ............................. CCCTGCACGATCAGTTATCCCGCGAGCTTGAA 67598 29 100.0 32 ............................. TCCTCATTAATATCGCGCATGATGCTGCGATA 67659 29 100.0 32 ............................. ATGATCAATAGCGGCCTTGAGCGTCCTTTTCT 67720 29 100.0 32 ............................. GCGGACACTGTCATCACGACTGGCGCTGTACT 67781 29 100.0 32 ............................. AACTGATAGAACGGGAACTGAAGAATGCACGA 67842 29 100.0 32 ............................. GAATCCGACGAGACCGGCGAGAGCGGCGAAGC 67903 29 100.0 32 ............................. TCTGATATTCGACGACACTGCATCTGGCGCTG 67964 29 100.0 32 ............................. TCAGACTGGTAGTCCGCGAAAGACGAGTATAG 68025 29 100.0 32 ............................. GCTGTGAGAGACGTTTTAACGGTGGGTCGGTA 68086 29 100.0 32 ............................. CACCCCGCCGTGCATCCGGTGGCTCTTATCGC 68147 29 100.0 32 ............................. GTTCGAGAGGGCGTTAATAACAGCGGGGTCGG 68208 29 100.0 32 ............................. ATTCCATGCCTCTCGCCGCTTGATGCTCCATA 68269 29 100.0 32 ............................. CTGTTTGGCCGCCTCCTCCTTTGGCAGCAGCT 68330 29 100.0 32 ............................. CTCGCGATACAGGTGGCTGAACATGCAGATAA 68391 29 100.0 32 ............................. TCTTCATGCGCATCGACGCCGATGGCGACGGC 68452 29 100.0 32 ............................. ATGCACCCGATTAGATACCACGGGCCAAACAA 68513 29 100.0 32 ............................. GTCGTCGGTCACCAGCGTCTTGTGGCCCAGTG 68574 29 100.0 32 ............................. ATCAGGCGTCTGACCGAATATTGCCGTCAGGA 68635 29 100.0 32 ............................. GACAGGTGATCCGGCCCTATCAGGGCCAGGCC 68696 29 100.0 32 ............................. GTTGCTTCGTTTGAATCGGGGAGTTTGGCGAC 68757 29 100.0 32 ............................. ATGGATTGCACAATCCAACCTTTCAGCAACTC 68818 29 100.0 32 ............................. AGTCACCACAATGTATCCCTTCGGTCTCCATT 68879 29 100.0 32 ............................. CCTCAGGGTTTCGCGCGGACCGACTCTGCCTG 68940 29 100.0 32 ............................. CCAGCAGTCAGTGCAAAGCGGCGTGCCATCAT 69001 29 100.0 32 ............................. ATGGCCTGATAGTACACGCGTACGCCATTGGG 69062 29 100.0 32 ............................. CCGGCCGCATAATCAGGCTATCCATCAAAATC 69123 29 100.0 32 ............................. CATTGCGCTCACTCTCTTTACGCTCGCTCGAT 69184 29 100.0 32 ............................. GCCGCGGGTAAAGAGGGTATTTTGCTTGAGAA 69245 29 100.0 33 ............................. GGTATCGCGCCGCCGGCGGGATGGCGGTGCAGA 69307 29 100.0 32 ............................. AATATCCTGTCAGCGTGTCACAGATGATGAGA 69368 29 100.0 32 ............................. CACGGAACCCACAAGAGACGTTTCGGCCTCAT 69429 29 100.0 33 ............................. CAGGCGCTGATTGCCGAGCCAGAGCAGGCCGAC 69491 29 100.0 32 ............................. GTTTTCCGGCGCATTGGCGGCACTCACAAGCT 69552 29 100.0 32 ............................. ATTCTGGGATGCCGGTCTGGTCAAGCAGGGCA 69613 29 100.0 32 ............................. AATGGCCTTTCTCACAGCGCTTGTGGCGCCAA 69674 29 100.0 32 ............................. ATGCCGCGCTCAGTCCCGTGTCAGCAATTATC 69735 29 100.0 32 ............................. CGTCACAGGCGACCGCTCAGCGTCAGCTTGCA 69796 29 100.0 32 ............................. GCTCATCGGCCCACATCTGGCGCGACTCGGCC 69857 29 100.0 32 ............................. AAACGCAAACATGCTGGGCGGCAATGGGTATG 69918 29 100.0 33 ............................. TGGGCCGATGCTTCAGTCACCTATGGAGAGAAT 69980 29 100.0 32 ............................. AATGCCTTCGTACCAGTCGGGACGTTGATAGA 70041 29 100.0 32 ............................. GTGGCGGTGATCAGGGCGGCAGTGGTGCAGGT 70102 29 100.0 32 ............................. ACGTATTGGCGCAGATGATGCAGCGCGCACTG 70163 29 100.0 32 ............................. AACACCCGATCACATCTTGAATTGATCATGCA 70224 29 100.0 32 ............................. AAATCCGCCGACGTCTCTATCTGGTCAACATG 70285 29 100.0 32 ............................. GCATCAAAAGCGGCGTCAGGCATCGGGTTATA 70346 29 100.0 33 ............................. CGATCAGTGGCGCCATACTGCGATGATTCCGAC 70408 29 93.1 32 ............GA............... ATTGCGGAAGTTGCCCAGGCCACGACTGTCGC 70469 29 93.1 32 ............GG............... ATGCCGATCCGTACCCAGCTGGCCCGCTTGGA 70530 29 89.7 32 ............AA...A........... ACCCGACCTCTCCACTGGCAGGAGCCGGTCAC 70591 29 86.2 0 ............GAT...A.......... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGATCAATGAAAAGCAAATCAGGTCAAAAGCCATCGCCGGTCGGTCCGACCGGATACCGCTGATGCCTCTTTTTCTGTCCGGGAGATCTCAGTGCCCAGTATCGATATCCAGCTCGATCTCAGCGCCGAGCAGTGCCGCGCCCACTACGCCGGCGTGGCCGACAGCATTCACACCCGCACGCCTGATGGGCGCAGCGTCATGCTGCCTTCAAGGGTGCTCCATCACATCATCAAACGTGACGGCGTGCATGGCACTTATCGCGTCACCTTCGATGATGGTGGGCGATTCATCTCGATCCGGGCGGTGTGATGACAGGACACAGGTTTTATGCCACTAGAGGAACACCGGTTTGAATAGCGTTGGTGAAACGTTTTTATTATATTTTTCTTGATCTCAAGTAATTGATTTATAGAACAAAATTATTTTACTCAGGGTGCGAAAAACCGGTGGAAAAACATCACCTGTTTTTGCTCTTTAAAAACAAAAGGTTATATTTAGA # Right flank : GGAGTTAAAACAAGAAGCAGAAAAACAGGGCGGGTTTCAAACCGCGGAGATCCGATTGATATGAGTAATGGCGCCGTTCCAGACCATCTCATAGTGTTCGGTCTGAACAATGTCCCGGACCGGGCGAGGTGTCATCAACCCCCAGCAGAGGTTGCCCGGCGAGCGAGCCGAACGGTAGCGAAGACCGGGAAGGCCGTGCGCGTGAATCTCATCACCCAGGGCCCGCGAGGCGGTGTAGTCGTCAGGGGCATAAATGGCGTGGGTGGAAGCGAGCATCAGCGCATCTGCCATGCCGGATTGGTCGAATCGACAATGCAGGCCGCGCAGTACGAACCGCTCATAGCCAAGCTCGGGTACCTTGCGCCAATAAGCGGTCTGGTGATGGCTGACCTCGGCGATCGCCGTAGCCATCTCGTCGGCGATATAGAGCACACCAAATCGCCCGCGACTAAAGCGTGAGCCGGTCAGGTTAACGTGGGTGAACGGCGCGGTCGCATAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81341-83811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAPM01000005.1 Kushneria marisflavi strain DSM 15357 Ga0215642_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81341 29 100.0 33 ............................. CGTGCCCTGATAGGCGATCCCGGCTGTGCCGGC 81403 29 100.0 32 ............................. CGGTTTTTGTAGTTGACAGAATCCCAGTTTCC 81464 29 100.0 32 ............................. GCCACCGATTGGGCGCTTCAGCAACTTGATGC 81525 29 100.0 32 ............................. GCATTGAGTCAATGGCGTTTGCCAGCGCTTCG 81586 29 100.0 32 ............................. GCTGCCGAATAACACCGGCATGCAACACCACC 81647 29 100.0 32 ............................. GCTGCCTGATAGTTGTTCTCGGCTGCCGTTCG 81708 29 100.0 32 ............................. TATACCATATTTCTACTGCTGTGTTGCAAAGC 81769 29 100.0 32 ............................. ACTTGGACCGGCGCACAGAACGCCGACCCGGT 81830 29 100.0 32 ............................. TCGGCCCTTCTGAATTGGCTGGGCGTACCGAT 81891 29 100.0 32 ............................. TCTGGTGGTTCTTCCCCAGCGCGGACAGCGCG 81952 29 100.0 32 ............................. GCGTGGCGAAGTGCAGGATTTGTTGATGATCA 82013 29 100.0 32 ............................. GTCGCCAACTTCCCGGTGGCTGGCAACGTAGG 82074 29 100.0 32 ............................. TCCTCGCTGGCCCGCAGTGGCTTGAACCACAT 82135 29 100.0 32 ............................. AGAAAACCTCAAAGCTCAAGTCTCTGGGCGAT 82196 29 100.0 32 ............................. CTTCCAGTCTGGCTCTGAGCCATACACTGGCG 82257 29 100.0 32 ............................. TAGTAGGGCCCGAACACCTCGGTCATCCTGGG 82318 29 100.0 32 ............................. TATGAAATATACATATCTCTTAACTGCATATT 82379 29 100.0 32 ............................. CGTTCGTGGACAGCCACGCTTCAAGTGCGCGG 82440 29 100.0 33 ............................. TCGACAAAAGGCGTTATAAGGATTTAACCCTTG 82502 29 100.0 32 ............................. GCTGCGTTCGTGTTCACTCAGGTCGACCCACG 82563 29 100.0 32 ............................. GTACATAAACGACGAAAACGATCCACGCACAA 82624 29 100.0 32 ............................. ATCAGCTCATGTCCGCCAGCCTCGGCCTTGCC 82685 29 100.0 32 ............................. GTTTCACCCAGCACCAGCTCCATGTCAGGCAC 82746 29 100.0 32 ............................. GAATCTCACTGGGTCGTTGTGCGCAACGGTCT 82807 29 100.0 32 ............................. GCCTTGCCCGCCACGCTTGATAAGCGGTGTGA 82868 29 100.0 32 ............................. CCACAAACGCCCCGCGAGTACAGAAACCCCTG 82929 29 100.0 32 ............................. CCGGATATCAGCACCGGCCAGAGCCCACTTCG 82990 29 100.0 32 ............................. GCCACCCGGGTAGCTGAACAGTGCCAGACGAT 83051 29 100.0 32 ............................. TCGGTGGCGAGATCACCATCAATGGCATTCAG 83112 29 100.0 32 ............................. CGCGCAAACTCCGGGCCGGAAAAACGGGCGCT 83173 29 100.0 32 ............................. ATGGAACAGCCGCATTGAGATTTGCTTTACAG 83234 29 100.0 32 ............................. CCGCAGGACACTCTGGTAGCGATGATGATGGG 83295 29 100.0 32 ............................. CCCGAGGAACCACCAGTAGAACCGCCGCCGCC 83356 29 100.0 32 ............................. TCGCCATAGATACAATCAAGGCGCATTACAGG 83417 29 100.0 32 ............................. ACGATCCATGTCATCGAGGTCGAGGGCCAGTC 83478 29 100.0 32 ............................. ATTACGCCGCGCTGCTGCCTTGCTGGGCAGGT 83539 29 100.0 32 ............................. CTCATTTGCTTCTCCGATGGTCTATCTGATAG 83600 29 100.0 32 ............................. CTTCCCTACTAATGCAGGAGCTATGTGATGCA 83661 29 100.0 32 ............................. CTGCCGGTATATATCAGAATGAATTGAGTCCA 83722 29 93.1 32 ....................A..C..... TACAAAGGCACTGACCTCAGCGAGGTCACACC 83783 29 82.8 0 ........T.....T...A....G..T.. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 CCGTTCCCCGCAGGCGCGGGGATAAACCG # Left flank : AAATCGAACCACCGCCACCCCCGGCCGATGCCGTGCCGCCCGCCATCCCCGAGCCTGAATCGATCGGCGATAGCGGCCACAGGAGTCGATGACATGGCGATGCTGGTGGTGGTAACAGAAGCCGTCCCCCCACGGTTGCGTGGCCGGCTGGCGATCTGGCTGCTGGAAATTCGCGCCGGTGTCTATGTGGGCGATGTCAGCAAGCGGATTCGCGAAATGATCTGGGAACAGATCGAGGTGCTGGCCGAGGAGGGCGGCAATGTTGCCATGGCCTGGGCCAGCAACCATGAATCCGGCTTCGAGTTTCAGACCTTTGGCGACAACCGTCGTATCCCCATCGACCATGACGGACTGCGTCTGGTGCGCTTTTTGCCGCCTATGGATAAGTAGCTGTTTTCAAAGCTCTTTAATAAAAAAGCGTTGTGCAAAAAATGATCAAAATCGCCGGTGGATTTTCTGCTGGCGATTTTTGTTATTGAAAACAGACGACTACAATTAGT # Right flank : GTTATCCGGTGGCGCAGTCACCCCGCCATCACCGACGTCAATGTTTATCGCTAATCAGGGCGCAACGCCGGCGCCCTGAGCACCAGTTATCCGACGATTAACGGAGAACTGCATCGGCAGCTCGAACGAGCCAGGGTTGCATGGGCGCAGTGTGTGGCAGAAACCGGTGCGGTGATTGCATGTCATGAGGAGGGAAATTGAAAAGCACGTCCATGTGCAGAGCCCCCATGGTGGCGAGGCTCATCCTTGAATAAGAAATGTCGCATAAATGTTGAGCAATTAACATCGTTTGAAAGAAGAATTAATCCCTGGGAAAGCTCACCGCTCTGCATCAGTATCTGATCAAGGCCTGTGCCCATGCCCTTGAGGATAAGTGTTACTGGAGCGTGTAATGAGAACGTTTGCCGTCCTCCATGGATGCAGGGATTTGCCGGTGATGATCGTCAATTTCCGGGGAAGTGCCAATCGTCAAAGCGCCGTTCAGCGCTGGGCCTTACATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 184328-184060 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAPM01000005.1 Kushneria marisflavi strain DSM 15357 Ga0215642_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184327 28 100.0 32 ............................ AAGTCGACCAAGGCCGAGCCCAAGCAGGAAAC 184267 28 100.0 32 ............................ ATAACCGGCTATGTCTTTAGGGGGTTCATCAA 184207 28 96.4 32 ..........A................. AAACCGATCATCGTCGCCGTCCGTGTCGAAGA 184147 28 100.0 32 ............................ AAACCCGCCGCCAAACATCGACATGAGTATTG 184087 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : ATGTCCGGTGCGGCCATCACGATCACCGTCATGACGCTGGCCGCGGCGCATACACTGGGGCTGGGCGTCGATTTCCTGACGGCGTTTCTGCTCTGCGTGGTCTCGGCCCTCGCGGCCTGCGGCGTATCCGGAGTAGCTGGGGGCTCGCTGCTGCTGATTCCGATGGCGGCCAGCCTGTTCGGCATTTCCGCTGACGTCGCGATGCAGATTGTCGCTGTTGGCTTTGTCATCAGCGTGCTGCAGGACTCCACGGAGACCGCCCTCAACTCCTCTACCGACGTGCTCTTCACCGCCGCGGCCTGTCGCTCCCCGGGAGCTCAACGGCGTCTGGACGATGAAGCCTACGACGAGACGGCCTGAGGTCGGAGCTCGGGTCGTGTTGCCAATACGAGTGTGCATCCTTTCGAGCCGCCCATTCGGGCGGCTCTTTCATTTCCTTTCCGAGCTGCCTGTACGGCAGCTCAGAAGTATGCCTCCATGACGGCTTGTCGAACAGGTCC # Right flank : ACGTCGAGCAGAAGCGGCCCAAACAGCGGCGACGACGATGTATGCGAGGTTAATGCCATCCCTTCGAACAGACGTATTCGGCAGGCGCCAAGCCTCGAAAGATTAGCCGTGACCGCTCGATATGCCGGAAAGACCCGGGTCATTTTTCAAGCGTGTAATCGATCGTGGTGACCACCCGTATTCGTTTGATGTCCGGGGTATAGCTGTCGAGATCCTCGATCGAAAAATAACCCTGGCTTGCGTTTTTGATGGTACCGACATGGCTGTCGGCATCCCGGGCAAACTGCTGCGCCGCACTGCGGGCATCTGCCGTGGCTTCTCCAATCATTTCGGGCTTCAGGGCATCAAGCCCGGTAAAGAGAAACTCGGTGCGATAGTCATAATTGGGCGAAAGCACCACGCCCTCACTGACCAGCTCTCCCGTTCGGGGCATTGCCTGCTTGACGCCCTCGACCTTCGGAGTGCGTAAAAGCACCGTTGCTTCCCCCTGATAGCGCTCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //