Array 1 2741764-2741496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048796.1 Providencia vermicola strain P8538 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2741763 28 100.0 32 ............................ ACGCAGACTCGCTCATGACGCTCTGATCTATC 2741703 28 100.0 32 ............................ ACACAATATATAAGACCACTGACAATAATTAA 2741643 28 100.0 32 ............................ TATCACTACGATGCTCAAGTAATACTTGTTTA 2741583 28 96.4 32 ..........A................. TGAATGTTTACGCCAAGGGAAAACAATAGTGT 2741523 28 82.1 0 .......................GTTGG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTCGATTCTGACAGTACCGGAAAATGCCATACCAGTCAGTTATGTACGACAACATGTGAAAGGTAAAAAACGGACTGAACTGGATATACAAAAGAAAGCGCAATTTCTCTCAATAAAATCGGGGCAGCCTGCGGAAGTTTGCTTACATGTGTTGAGGAAAAATCAGGTTAATGAATTTAGTCGATTGCCTTTTATCTGGATGGAGAGTCAACAGAGTAAATCTAAATATGAAGGAGCAATTCATCGCCCGTTTCCGTTATTTATTCGCTGTATTTCTGCGGGAAAAGCACAATTAGGTGGGTTTAACTGTTATGGATTAAGTCAGCAAGTCGGAAGAGATGTTGAGTTAGCGACAGTTCCTCATTTTTAACCTTATTATTTTGCTCTTTAAAAATAAAATTATAAAACAATGAGTTACAATTAACGGTAAAAAAGAAGGTATTTTCTCTAAAATATCACTAACTGTTTGTTGTAACTTATTTTTTATTTGATAAGCTCGC # Right flank : TGTTTTAAATAAGTGAAGTATACCATCATCATAAAAATGGGAACTTATAGTCGCTAGTGTTGTTTGTGAGATATCATCCCATTAATAGTTAAAGCTGAAGATAATATATCAAAAGAATCTATCAATAGAGCAGTAAATAATACTGCACATCAAATACGTAACCTAATAAATAGAATGATATTATTTAATAATAGTCAAATTTACGTTTTAGTTGTTATGATTTAGATAATGTTTAGCGTATTTGTAAATATTCGCTAAATAACATTGCTATTGATATAAATAGTAAAAAATAGCCCCAAGATATATTGGGGCGAAGCTTAAAATCAGCATTACAGGGAAAATCCAGTAATCAATGCATTCTCTCGTAGGGGGAGAATGTGATAAGTATAGTACAGTAGTTTTAATTAATTGCATAACAAGAATATGTTACCAAATACTGAATGGAATGTACTGTTTTGAACTATTTTAGTGAATGAAATACAATGTTATTGATAAGGTAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2750925-2750777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048796.1 Providencia vermicola strain P8538 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2750924 28 100.0 32 ............................ TAACGTTTGGCATTGAGCCTGACTACGACAAG 2750864 28 100.0 32 ............................ AAACCAGTTCTGCCCCGCATTCGCCGCAGCTG 2750804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTATATTTTGTGAAGCGTAATACTGTTAATATTCAAAAGCATACTCTTCGTATTCCAGTGATTATATTTTATTTCTGATGATAAATTGCTTCTATTTGTTAATGAAGAGGTTATTCACAAGATGATATGGATTGCTTTTACACATAAACAAAAGTATTTATCTAGTAGAGTTTAAATACAAGAGACAAAAGAATTACGTTAGGTGACTATTCTTTTGATAGCTAACTTAGCGAGCCGACTTATGCAACCGATGAAAATCGAAAAATTGGCAGAAGGGCGTGTGTTATTCAAAATTGAAAATTCTTAACGTATTTCTATCTTTTTTGAGGGGATGATATAAGTTTATATAAGGTTCAGTATTTTTTACCCCTTTATTTTTCTTGCTGAAATGTTTCTATTAAAAATCAACTGGTTATATGTCATTAAAAAATAAAAGGTATTTTCCACAAAATCAGATGTAATATATTGTTGAACTTAGATTTTTTGCTGATAATTTATA # Right flank : TGTGACCTACGGCATAGAAGGCCGTAGGTCACTAGTGTGCGATTATATCAGTGGCTCAAAATCCTCTTATCACTATATGCCTACAATACTATAAAAATTATTATCTGTTAGTCTTAATACAACATATAAGTTATTTTTATGATATGGATTGGGATCTGCTTCCCAAAATCACCTTATACACTATGAAATTAAAGGCGTAACGGTAGACGTAGCCTAAGTTAAATTGTATTAATATAGCAAGGTGGCTTATCAAAACAAACGGAAGGTTGGCTTAGCATGGATGATCTCTCTCCGTCAGATTTAAAAACAATCCTTCATTCTAAACGTGCCAATATGTATTACTTGGAGCATTGCCGAGTGATGCAAAAAGAGGGGCGAGTTCTCTATTTTACTGAAGCAAAAAATGAAAATCTTTACTTTAATATTCCGATAGCGAACACAACGGTTTTACTATTAGGAACCGGCACCTCTATTACTCAAGCGGCGATGAGAATGTTATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2879158-2878170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048796.1 Providencia vermicola strain P8538 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2879157 28 100.0 32 ............................ GGTAGGAAATATTGTATCAGTTACAAAAGATA 2879097 28 100.0 32 ............................ CCGCGAATGGGACACCGGAGCTGGCGTTTTGG 2879037 28 100.0 32 ............................ AGATCAGCAAAGAGGTGCTGAGGATACGCCAG 2878977 28 100.0 32 ............................ TATAAATATAATAGGATTAACAAGCATTGTCA 2878917 28 100.0 32 ............................ GTCAGTTGCGGCACTTAAAGAGCAACAGTCAT 2878857 28 100.0 32 ............................ CGTAAATTTGCGTGTAAAAGATTATTTTACAT 2878797 28 100.0 32 ............................ AGACAAACAAGCAGCTGAGACACAAGATAATC 2878737 28 100.0 32 ............................ TTTATCATCCAGCACGACCGGTGTAGTGATAA 2878677 28 100.0 32 ............................ AGTAAATTTGCGTGTAAAAGATTATTTTACAT 2878617 28 100.0 32 ............................ GAGCGAATACAACAAATACTAACTTTTATCTG 2878557 28 100.0 32 ............................ TATTTCTCCCACCCAAAATTTAGTACCTGAAT 2878497 28 100.0 32 ............................ TATAGGTGAATATATCAAAAACGGTGAAACAA 2878437 28 100.0 32 ............................ ACACAGAAACCAATCATGCACAATCTCGCTGA 2878377 28 100.0 32 ............................ TTTGAATAATGCGACTGAGGGAAATTTCCCTG 2878317 28 100.0 32 ............................ ATCAAACGCAATAAAGTTACCCGCAGCATCAC 2878257 28 100.0 32 ............................ GATCGATGCAAGAGTAACTGAGCAGACAGAAG 2878197 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAATCGGCGTTAGATAAGATTTCAAACATTGAGGCTAAGCAAGGGTTGCAATTGCAAGAAATTGATAAGTTAGATTTCCTTGCAGATACGCGCAGTATTCAAAATAGTCAGCGTATGAGTAATTTGTTAGATACAAATTGGACAGGGGCAACATCAGACTATTATAAAGAGATGGCAATGTTCCAAGCGTCTCAGGATATTTTTAAAGATTTAAATAGCATGTCACTGTTTGGCGGTCGCTAATTTATTAGCCAGCTTCAATTGGGTTGAGGCTGGCTAATTGGTTTACCCACTTCTTTTTCCCTCTTGTTCATATTTTTCCTATCAAACCATTGTATTTTTCTTCGTATGTTTTACCCTTTATTTACCTTTTTATTTTTGCTCTTTAAAAATTTCTGATAAAACAAGATGTTACTAAGGTAGTAAAAAAAGAAGGTATTTAGCTAATAATTAGCTTAATTTATTGTTGTCTAACGCATTTTATTTGCTAGGCTATC # Right flank : TCACGAAATCGACGCTATATATTAATGAATAATTAGAATACTTCTATAATGAATAGGTTTTAGTCGGAGATATAGAGGTTAATACATATTAATAAGAGTGATCATTTCAATTATTAGATACTTTATCTCTATCAATATTTGATTTGGCATGTTAAGGCGAGTGTGTTACTTTTATCAATACTTAACGTGATATGTTGAAATTAATTTATGTAGTTTTATTGATATTCAAAATAATACATTTAAGTCGCTTTTTAAATGTTTCTCGTTAACTATTTATTATATATGTTAATTTTACTGATATCTTATCAGCTTAGAAATCGATGATTTTACTGTTAACGTTCACTGCCGTACAGGTAGATTAATACATAAACCATATCAAGGTGATAGCTATTATAGGCTTGTTAGCCTTTAGCCAGATGAACAAATGATGATTTATCAACTGATATCAATTATAGGTATATGGTTATATGTTTAATGACTGTTGTTTTTTATAATTTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //