Array 1 613149-612338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000001.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_1_length_1156584_cov_142.281518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 613148 30 96.7 30 .............................G CCCCGCACAAGATTACATAGACAAAGTGCT 613088 30 90.0 30 ..........................G.TT GGTCTGGTGGACGAAAGGGCAAGCTGGCAA 613028 30 100.0 30 .............................. ATACAGGACGCAAGTTTAAGGAAAAGATCG 612968 30 100.0 30 .............................. CATATCGAATGCTTTCATATTTTCAGACAA 612908 30 100.0 30 .............................. CCGTAGCTTATAAGGGAAGCCGTGATTACA 612848 30 93.3 30 ............................TT TTAGTGTTCAAATGTTCATTTGATCATATG 612788 30 93.3 31 ............................TT GAATTAAACGCTTTGAAACGTTCCAACCTTC 612727 30 96.7 30 .............................G TCGTTAGACGAATATGCGTCTTGTTTAGAA 612667 30 93.3 30 ............................TC AAGGCGATCCACCTCCCGTCACAGTCATTT 612607 30 86.7 30 ...........T.C..............TT TGCTAAAAGGATTTATGCTTTAAAATACTT 612547 30 83.3 30 .......A.....C...T..........GT TGGCGTACGGATAACGGAAGAAAGCATAAG 612487 30 93.3 30 .......A.........T............ ATAACCACGGTTGTGGTAAGTCACTTTTAC 612427 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 612367 30 63.3 0 ...T...A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 14 30 90.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : TTTAGAAAAATAACGATCAACTGCAACGGATTGTGAAATTGTTCATGGCGGCATACGCCATTTAGAAAACCAACAACAAGAATATTTTTTCGTTCTTTTAGTTCATGGCGGCATACGCCATTTAGAAATGCTTTTAATGCAACAAATGGCTATCCAAGATGTTCATGGCGGCATACGCCATTTAGAAAACAAAAAATAATTACCGAGTTCAGCTTTAGCCGTTCATGGCGGCATACGCTATTTAGAAATCTTGCCCCTGTGTGCTTTGATTTGGAAGTGTGTTTATGGCGGCATACGCCATTTAGAAAATAAAGCGTAATACACGATCAGACATATTTATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGGCATACGCCATTTAGAAAAGCCCCGCACAAGATTACATAGACAAAGTGCT # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTCGAACAGATCAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAGAGCGATGGTGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 613669-613339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000001.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_1_length_1156584_cov_142.281518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 613668 30 96.7 30 .............................A TAACGATCAACTGCAACGGATTGTGAAATT 613608 30 100.0 30 .............................. CAACAACAAGAATATTTTTTCGTTCTTTTA 613548 30 93.3 30 ............................TG CTTTTAATGCAACAAATGGCTATCCAAGAT 613488 30 100.0 30 .............................. AAAAAATAATTACCGAGTTCAGCTTTAGCC 613428 30 93.3 30 ..................T.........T. TTGCCCCTGTGTGCTTTGATTTGGAAGTGT 613368 30 93.3 0 ...T.........................T | ========== ====== ====== ====== ============================== ============================== ================== 6 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAAAC # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCTCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAAAAGTTCAATAAAATCAATAAGTTATAATATGTCTTTTTTTGATTGGGTAAAATTCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : AAAGCGTAATACACGATCAGACATATTTATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGGCATACGCCATTTAGAAAAGCCCCGCACAAGATTACATAGACAAAGTGCTGTTCATGGCGGCATACGCCATTTAGAAAAGCCCCGCACAAGATTACATAGACAAAGTGCTGTTCATGGCGGCATACGCCATTTAGAGATTGGTCTGGTGGACGAAAGGGCAAGCTGGCAAGTTCATGGCGGCATACGCCATTTAGAAAAAATACAGGACGCAAGTTTAAGGAAAAGATCGGTTCATGGCGGCATACGCCATTTAGAAAAACATATCGAATGCTTTCATATTTTCAGACAAGTTCATGGCGGCATACGCCATTTAGAAAAACCGTAGCTTATAAGGGAAGCCGTGATTACAGTTCATGGCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 367295-365888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000003.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_3_length_420901_cov_143.485521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 367294 28 100.0 32 ............................ AGATAAAGCTGTAAATTCAGTAACAATGCCGT 367234 28 100.0 32 ............................ TCTCAGCTTAATTGTGCCAACACTTGTTTTTT 367174 28 100.0 32 ............................ ACTCACAATTCCTTTTAACTCTTCAGGAGTCA 367114 28 100.0 32 ............................ AGAAACATGCAATACAAATACATAATATCACT 367054 28 100.0 32 ............................ TTACCAATGAAGTTTGCTCCAGCGTTTGGTAC 366994 28 100.0 32 ............................ AAGTAAATACTGTTAGTCCCATGGTGGCAGAA 366934 28 100.0 32 ............................ TCTTTGGGGTTTTAAATCAGTTTGAACGTGAT 366874 28 100.0 32 ............................ AAAGTCGAATATATTGAGCGTGAAGTGCAAAA 366814 28 100.0 32 ............................ TGCAAAATTTATAGCTTATTCCTACAATTTTA 366754 28 100.0 32 ............................ TAGGTAAGACAAAACAGTAGTATGTGCAACAG 366694 28 100.0 32 ............................ TCTCAAAATGGAGGTTTAATGATTCAAAATAG 366634 28 100.0 32 ............................ TCTTCCAGATCCGAGACATTGTAGAAAGACAT 366574 28 100.0 32 ............................ ATGAGATGCAGAATCTTTTGCCCACGAAAAAG 366514 28 100.0 32 ............................ CCTCTGGCACCGCCTGAGCTTTGGCTTTTTGC 366454 28 100.0 32 ............................ ATCACGACACGGGCATTACCTGCGGCCCAAGT 366394 28 100.0 32 ............................ TCCCACACACCGCCTTTACTGTCTTGGTAAAA 366334 28 96.4 32 ...................C........ CGAATCCAGACATTAGACAAGTAGCTTCTTTA 366274 28 100.0 32 ............................ ATTGACCCAAGAAGTTTCTTGATATTCGACTT 366214 28 100.0 32 ............................ ATTTGGTGTTGGGGGACCGTTCGTGCATTGTG 366154 28 100.0 32 ............................ TCTAGCGCTGAACTCAAAAATACCTAATGGGT 366094 28 100.0 32 ............................ ACAAACTGCCGGACGCTGTAAGAATTTGGACC 366034 28 100.0 32 ............................ AAAGAACAGGTCGAAGAAGCGATAAAAGCTTT 365974 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 365915 27 78.6 0 A..T........TC........C.-... | A [365911] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TGCTTCGTATGTTACAGATGAAGAGGTTGAAGTTGTTCATCGCATAGATGATTTAGAAATATACGCATTAATGGGAAAAAGATTTGGGAATGTTGTTCATCGCATAGATGATTTAGAAAGCAACAACTGGTAAAAGTTTTCTTGTTGTTATGTTGTTCATCGCATAGATGATTTAGAAAAAATAGAGCCACTGGCTTGCGCTTATCCACGCGTTGTTCATCGCATAGATGATTTAGAAAAATATACAAATTAACCATGAAAGCACGCTGCAGTTGTTCATCGCATAGATGATTTAGAAAAGATAAAGCTGTAAATTCAGTAACAATGCCGTGTTGTTCATCGCATAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATAGATGATTTAGAAAACTCACAATTCCTTTTAACTCTTCAGGAGTCA # Right flank : TTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 367824-367496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000003.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_3_length_420901_cov_143.485521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 367823 28 100.0 32 ............................ TTGCTTCGTATGTTACAGATGAAGAGGTTGAA 367763 28 100.0 32 ............................ TATACGCATTAATGGGAAAAAGATTTGGGAAT 367703 28 100.0 32 ............................ GCAACAACTGGTAAAAGTTTTCTTGTTGTTAT 367643 28 100.0 32 ............................ AAATAGAGCCACTGGCTTGCGCTTATCCACGC 367583 28 100.0 32 ............................ AATATACAAATTAACCATGAAAGCACGCTGCA 367523 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAGGCCGTTTTACCTGCATTTGCCTGATAATCAGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTAAGATAAGGTAAATCAAGTGCTTGTTGCTTACTTAATCGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGCACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGTTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGATAAAGCTGTAAATTCAGTAACAATGCCGTGTTGTTCATCGCATAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATAGATGATTTAGAAAACTCACAATTCCTTTTAACTCTTCAGGAGTCAGTTGTTCATCGCATAGATGATTTAGAAAAGATAAAGCTGTAAATTCAGTAACAATGCCGTGTTGTTCATCGCATAGATGATTTAGAAATCTCAGCTTAATTGTGCCAACACTTGTTTTTTGTTGTTCATCGCATAGATGATTTAGAAAACTCACAATTCCTTTTAACTCTTCAGGAGTCAGTTGTTCATCGCATAGATGATTTAGAAAAGAAACATGCAATACAAATACATAATATCACTGTTGTTCATCGCATAGATGATTTAGAAATTACCAATGAAGTTTGCTCCAGCGTTTGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 372923-375111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000003.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_3_length_420901_cov_143.485521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 372923 29 96.6 31 ............................C AATAGCGATCAACTGCTACAGATTGTGAAAT 372983 29 100.0 31 ............................. GTTAGTGATGATGATGAAGATGAACGTGCAA 373043 29 100.0 31 ............................. TTCAGGGTTTGGCGGGAGCAGCTGCAACTTA 373103 29 100.0 31 ............................. TGTCGTTAAAGTCGGTAGATAATGACTCATC 373163 29 96.6 31 ............................C AAAGTTGGGTATTCACGTATTGTTAGCTTAC 373223 29 96.6 31 ............................C AAATCTTCGGCATAAATGTTGTATATAGCAC 373283 29 100.0 31 ............................. GCACAGAACTAAAAAATGGCGTGCCTTTTGC 373343 29 100.0 31 ............................. GTTGCATATTGTTTGATTTCATCCGGACTCA 373403 29 96.6 31 ............................A CGGGAAAAAGAAACAAGCGAGTGAGGCTGGT 373463 29 96.6 31 ............................A TCGAAAGCGCGGACTTGTTGAAGCCGCAACG 373523 29 96.6 31 ............................A TGTGATATGGGTTTGACATCATAAGATCATA 373583 29 96.6 31 ............................A ATCAAATAACGTTTATACGGGTAATAAAGCG 373643 29 96.6 31 ............................A GATATTGCCGAACTCATAAAACTTATTACAT 373703 29 96.6 31 ............................A GTCAGCATTGTGGCCGATCGGCAATACTTCA 373763 29 100.0 31 ............................. GTCCGAAATTCAGATGGTGAAGTGACATATG 373823 29 100.0 31 ............................. CAAGTAGGGCAGGGTGTGAAAATTGGTAGTA 373883 29 100.0 31 ............................. GTGGTTGAAAGTCTCCTGCTGCTGTAAGACG 373943 29 96.6 31 ............................A CCATCGGCTAAAACACGTGTTCGATGGGCCT 374003 29 100.0 31 ............................. CCATGTGTAAATTCACGCACAACTTCACTAC 374063 29 100.0 31 ............................. AACCCTACCGATAGCCCGAGCCAAAAACCAA 374123 29 96.6 31 ............................A CAAAATATATGTGTTCGGGTACGCACGTTTT 374183 29 96.6 31 ............................A AACAGGGTTCAATTATCGCTAAAGCTGCTAT 374243 29 96.6 31 ............................A AATTGATATAAAACGATGTCACCCGGTTGCG 374303 29 96.6 31 ............................A CTCTGCTCTGGATCGCTCAGCAGTAGAGTCT 374363 29 96.6 31 ............................C TAATGCTGCTGGTACAGTTGCTGCTGATTAT 374423 29 100.0 31 ............................. GTAGCTAAAGAAGTCTTTTCAAAGCATGCAT 374483 29 100.0 31 ............................. ATGTTGAATGATCGTAAGTATCTAATTTTTA 374543 29 96.6 31 ............................A ATGCCTGTTTTAATGAAGATTCGGGATAAGG 374603 29 100.0 31 ............................. AAAACTTGCGATGTAATGCCGCGTTCATCGA 374663 29 96.6 31 ............................A CTTACCCGTACATCAAGAATTAGTTTATCGC 374723 29 100.0 31 ............................. AAACAGGTTAAAGATCAAGTAGCCTCACAAC 374783 29 100.0 31 ............................. TCTGTGGTTGCTGTACGTGTTAAACACTCCG 374843 29 96.6 31 ............................A ATGCCTCATTCACGTTTAACGGCCAGACTTA 374903 29 93.1 31 ............CC............... TTACCTGAGTTGATCGTTTATGAATCATTTG 374963 29 82.8 31 ...AC.......CC..............C ATGTTTGGCACTTATCAAATGACTCATAGAC 375023 29 82.8 31 ...AC.......CC..............A CTGGATGTATTGTTCTTCTTGTCGTTCTTTC 375083 29 82.8 0 ...AC.......CC..............C | ========== ====== ====== ====== ============================= =============================== ================== 37 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATATAGTAAAATCAAATAAAATCATATATTTAATCTAAGTGCCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTGAACTCTA # Right flank : CATGTTTGGCACTTATCAAATGACTCATAGACGTTACTCATCGCCCAGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAATCCATATGACCTATGTGTGCTTAAAGCGGTTCGTTACTCATCGCCCAGATGATTTAGAAAACGCATCTTCCCGATTAGGCGAATAGCGTCTTGTTACTCATCGCCCAGATGATTTAGAAATGAGGCATTAGGATTATCCGACATGTACATACGTTCTTCATCGCATAGATGATTTAGAAATCGTGCAATATCTTTAATCGATTCGCAATATCGTTCTCCATCGCATAGATGATTTAGAAAGACTACTCCAGAAGCCAAGGCAGCATTTGAGCGTTCTTCATCGCATAGATGATTTAGAAAATTAGGGTTGTCCATCATGAACATCCCGCGCAGTTCTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 375303-375991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJVD010000003.1 Acinetobacter baumannii strain INTEC_OZFC7 NODE_3_length_420901_cov_143.485521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 375303 29 82.8 31 ...AC.......CC..............A CGCATCTTCCCGATTAGGCGAATAGCGTCTT 375363 29 86.2 31 ...AC.......CC............... GAGGCATTAGGATTATCCGACATGTACATAC 375423 29 100.0 31 ............................. CGTGCAATATCTTTAATCGATTCGCAATATC 375483 29 93.1 31 .....C......................G ACTACTCCAGAAGCCAAGGCAGCATTTGAGC 375543 29 96.6 31 ............................A TTAGGGTTGTCCATCATGAACATCCCGCGCA 375603 29 100.0 31 ............................. TAGCGCCCAGCATCCCAAGCGCTTGATTACA 375663 29 100.0 31 ............................. ATATATACTATTTTCACCGTCATTTTCTTTT 375723 29 82.8 30 ...TC.....T..C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [375747] 375783 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 375843 29 86.2 31 ...GC.......C...............A TTATCCAGATAAAACCATATCTACAAAGTGG 375903 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTGTTG 375963 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 12 29 91.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TTTAGAAATTCTGTGGTTGCTGTACGTGTTAAACACTCCGGTTCTTCATCGCATAGATGATTTAGAAAAATGCCTCATTCACGTTTAACGGCCAGACTTAGTTCTTCATCGCCCAGATGATTTAGAAATTTACCTGAGTTGATCGTTTATGAATCATTTGGTTACTCATCGCCCAGATGATTTAGAAACATGTTTGGCACTTATCAAATGACTCATAGACGTTACTCATCGCCCAGATGATTTAGAAAACTGGATGTATTGTTCTTCTTGTCGTTCTTTCGTTACTCATCGCCCAGATGATTTAGAAACATGTTTGGCACTTATCAAATGACTCATAGACGTTACTCATCGCCCAGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAATCCATATGACCTATGTGTGCTTAAAGCGGTTC # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGTCACTGATGAACATACTTAC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //